RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 SOCS1O15524 211 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 ZNF806P0C7X5 589 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 PET100P0DJ07 73 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 GLI4P10075 376 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 BLVRBP30043 206 aaPredicted RBP9.35□□□□□ -0.91
COL3A1-202ENST00000317840 FOXF1Q12946 379 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 RBM39Q14498 530 aaKnown RBP9.35□□□□□ -0.91
COL3A1-202ENST00000317840 ZNF260Q3ZCT1 412 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 TMEM128Q5BJH2 165 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 ZDHHC22Q8N966 263 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 TOMM40LQ969M1 308 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 CHST11Q9NPF2 352 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 NBASA2RRP1 2371 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 IGKV1D-43A0A0B4J1Z2 117 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 TLX3O43711 291 aaPredicted RBP9.35□□□□□ -0.91
COL3A1-202ENST00000317840 ZNF354AO60765 605 aaPredicted RBP9.35□□□□□ -0.91
COL3A1-202ENST00000317840 CD8AP01732 235 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 ZNF616Q08AN1 781 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 ZNF345Q14585 488 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 ALKBH2Q6NS38 261 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 TMEM104Q8NE00 496 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 PHYHIPLQ96FC7 376 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 WBP1Q96G27 269 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 PRELID3BQ9Y3B1 194 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 TICRRQ7Z2Z1 1910 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 LTBP2Q14767 1821 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 DNASE2O00115 360 aaPredicted RBP9.35□□□□□ -0.91
COL3A1-202ENST00000317840 ABCD4O14678 606 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 BPNT1O95861 308 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 IFNA21P01568 189 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 IGHG1P01857 330 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 TTRP02766 147 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 CHRM2P08172 466 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 GABRR1P24046 479 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 FASLGP48023 281 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 PLEKHN1Q494U1 663 aaPredicted RBP9.35□□□□□ -0.91
COL3A1-202ENST00000317840 TCEAL6Q6IPX3 200 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 RAB11FIP2Q7L804 512 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 SLC25A45Q8N413 288 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 OR5AP2Q8NGF4 316 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 TCEAL3Q969E4 200 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 FAM131CQ96AQ9 280 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 G6PC2Q9NQR9 355 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 PISDQ9UG56 409 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 BDP1A6H8Y1 2624 aa9.35□□□□□ -0.91
COL3A1-202ENST00000317840 A0A1B0GX78 115 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 M0R036 132 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 SULT2B1O00204 365 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 RER1O15258 196 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 EFSO43281 561 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 S100A9P06702 114 aaKnown RBP9.34□□□□□ -0.91
COL3A1-202ENST00000317840 ZNF735P0CB33 412 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 FSTP19883 344 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 OR3A4PP47883 348 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 SNU13P55769 128 aaKnown RBP9.34□□□□□ -0.91
COL3A1-202ENST00000317840 RNF4P78317 190 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 GABREP78334 506 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 PDZK1IP1Q13113 114 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 TMPPEQ6ZT21 453 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 ARHGAP5-AS1Q96IT6 56 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 CD74P04233 296 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 IGKV3-11P04433 115 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 SLC25A4P12235 298 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 ADH6P28332 368 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 ZNF121P58317 390 aaPredicted RBP9.34□□□□□ -0.91
COL3A1-202ENST00000317840 MICBQ29980 383 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 OR56B1Q8NGI3 324 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 SLC22A11Q9NSA0 550 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 CSTBP04080 98 aaKnown RBP9.34□□□□□ -0.91
COL3A1-202ENST00000317840 RAB6AP20340 208 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 LAP3P28838 519 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 CD80P33681 288 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 PPT1P50897 306 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 CEBPGP53567 150 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 UNC119Q13432 240 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 IAH1Q2TAA2 248 aaPredicted RBP9.34□□□□□ -0.91
COL3A1-202ENST00000317840 TMEM176BQ3YBM2 270 aaPredicted RBP9.34□□□□□ -0.91
COL3A1-202ENST00000317840 FAM166AQ6J272 317 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 C5orf46Q6UWT4 87 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 RTN4RL2Q86UN3 420 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 CADM4Q8NFZ8 388 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 ASB10Q8WXI3 467 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 AQP3Q92482 292 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 PIK3IP1Q96FE7 263 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 WDR77Q9BQA1 342 aaPredicted RBP9.34□□□□□ -0.91
COL3A1-202ENST00000317840 DUSP23Q9BVJ7 150 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 PURGQ9UJV8 347 aaKnown RBP9.34□□□□□ -0.91
COL3A1-202ENST00000317840 ZNF175Q9Y473 711 aa9.34□□□□□ -0.91
COL3A1-202ENST00000317840 LILRA5A6NI73 299 aa9.33□□□□□ -0.92
COL3A1-202ENST00000317840 STMND1H3BQB6 276 aa9.33□□□□□ -0.92
COL3A1-202ENST00000317840 TSPAN2O60636 221 aa9.33□□□□□ -0.92
COL3A1-202ENST00000317840 CLPSP04118 112 aa9.33□□□□□ -0.92
COL3A1-202ENST00000317840 GLRA1P23415 457 aa9.33□□□□□ -0.92
COL3A1-202ENST00000317840 AKR1C3P42330 323 aa9.33□□□□□ -0.92
COL3A1-202ENST00000317840 MMP16P51512 607 aa9.33□□□□□ -0.92
COL3A1-202ENST00000317840 RAB32Q13637 225 aa9.33□□□□□ -0.92
COL3A1-202ENST00000317840 FAM189A2Q15884 450 aa9.33□□□□□ -0.92
COL3A1-202ENST00000317840 C1orf100Q5SVJ3 147 aa9.33□□□□□ -0.92
COL3A1-202ENST00000317840 DNM1P46Q6ZS02 220 aa9.33□□□□□ -0.92
COL3A1-202ENST00000317840 EIF4E3Q8N5X7 224 aaKnown RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms