RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 METAP1P53582 386 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 LKAAEAR1Q8TD35 194 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 SPTBP11277 2137 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 OR4E1P0C645 316 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 MIDNQ504T8 468 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 TMEM9BQ9NQ34 198 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 DUXBA0A1W2PPF3 345 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 TLCD2A6NGC4 264 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 RHBDL1O75783 438 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 CYBAP13498 195 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 GPR85P60893 370 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 NHSL2Q5HYW2 709 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 TMEM102Q8N9M5 508 aaPredicted RBP12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 CLDN23Q96B33 292 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 TMEM38AQ9H6F2 299 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 KRASP01116 189 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 PPP1CCP36873 323 aaKnown RBP12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 SUCLG1P53597 346 aaKnown RBP12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 NTNG2Q96CW9 530 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 A0A087X0M5 115 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 A0A1B0GX30 115 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 M0R135 149 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 SLC35E2P0CK97 266 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 PIPP12273 146 aaPredicted RBP12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 CST9Q5W186 159 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 ZNF799Q96GE5 643 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 GDF7Q7Z4P5 450 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 CTU1Q7Z7A3 348 aaKnown RBP12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 SYNGR2O43760 224 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 TNFRSF1AP19438 455 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 PDPNQ86YL7 162 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 EXD3Q8N9H8 876 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 SGK494Q96LW2 274 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 PACRGQ96M98 296 aaPredicted RBP12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 COL25A1Q9BXS0 654 aaPredicted RBP12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 CHST6Q9GZX3 395 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 SLC35B3Q9H1N7 401 aa12.67□□□□□ -0.38
CCDC88A-201ENST00000263630 HTR6P50406 440 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 A0A1B0GWA3 101 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 CLDN34H7C241 214 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 CIRBPQ14011 172 aaKnown RBP12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 PRSS45Q7RTY3 260 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 TMEM251Q8N6I4 163 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 A0A087WV62 115 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 LOC107986453A0A1B0GWG9 222 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 TMEM129A0AVI4 362 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 OPN1MWP04001 364 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 OPN1MW2P0DN77 364 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 OPN1MW3P0DN78 364 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 VRK3Q8IV63 474 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 OR52I2Q8NH67 350 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 DUS3LQ96G46 650 aaKnown RBP12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 MFSD2BA6NFX1 497 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 EMP1P54849 157 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 TCTN1Q2MV58 587 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 C19orf54Q5BKX5 351 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 TXNIPQ9H3M7 391 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 SH2D2AQ9NP31 389 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 PLSCR3Q9NRY6 295 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 UQCC1Q9NVA1 299 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 BRWD1Q9NSI6 2320 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 OR2J2O76002 312 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 PRRX1P54821 245 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 PMP22Q01453 160 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 ZNF552Q9H707 407 aaPredicted RBP12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 TMEM30CPA0ZSE6 113 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 CTSLP07711 333 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 IQCF3P0C7M6 154 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 CLDN18P56856 261 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 KLRB1Q12918 225 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 ZNF766Q5HY98 468 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 ZNF480Q8WV37 535 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 PPP1R1CQ8WVI7 109 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 RTN4IP1Q8WWV3 396 aaPredicted RBP12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 SLC5A6Q9Y289 635 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 IGSF23A1L1A6 192 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 MFNGO00587 321 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 LGALS7P47929 136 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 PAFAH1B2P68402 229 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 ZNF788Q6ZQV5 615 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 HSD3B7Q9H2F3 369 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 FOXJ3Q9UPW0 622 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 PEAK1Q9H792 1746 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 SDHAP31040 664 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 PNRC1Q12796 327 aaPredicted RBP12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 OR52N4Q8NGI2 321 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 TMEM255BQ8WV15 326 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 ZFP30Q9Y2G7 519 aa12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 COA3Q9Y2R0 106 aaPredicted RBP12.66□□□□□ -0.38
CCDC88A-201ENST00000263630 TMEM81Q6P7N7 255 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 LYPD8Q6UX82 237 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 PDLIM5Q96HC4 596 aaKnown RBP12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 A0A1B0GX78 115 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 RNASE1P07998 156 aaKnown RBP12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 AKAP12Q02952 1782 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 ACTL6AO96019 429 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 TRMT61AQ96FX7 289 aaKnown RBP12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 FBXL17Q9UF56 701 aa12.65□□□□□ -0.38
CCDC88A-201ENST00000263630 NDUFB3O43676 98 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms