RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 ANGPTL7O43827 346 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 C1QL1O75973 258 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 KNG1P01042 644 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 PRKACAP17612 351 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 HSD11B2P80365 405 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 SP6Q3SY56 376 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 FAM57BQ71RH2 274 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.42□□□□□ -0.9
USP28-201ENST00000003302 OR4K15Q8NH41 348 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 OR2AE1Q8NHA4 323 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 PIK3IP1Q96FE7 263 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 REEP6Q96HR9 211 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 CMSS1Q9BQ75 279 aaKnown RBP9.42□□□□□ -0.9
USP28-201ENST00000003302 CHMP1AQ9HD42 196 aaPredicted RBP9.42□□□□□ -0.9
USP28-201ENST00000003302 GSKIPQ9P0R6 139 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 LIPT2A6NK58 231 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 DHRS7CA6NNS2 312 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 IL2RAP01589 272 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 SERPINA5P05154 406 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 FAHP16930 419 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 HGFACQ04756 655 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 UBE2V2Q15819 145 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 PAN3Q58A45 887 aaKnown RBP9.42□□□□□ -0.9
USP28-201ENST00000003302 SLC25A21Q9BQT8 299 aaPredicted RBP9.42□□□□□ -0.9
USP28-201ENST00000003302 MTIF3Q9H2K0 278 aaKnown RBP9.42□□□□□ -0.9
USP28-201ENST00000003302 SLC39A1Q9NY26 324 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 MED13Q9UHV7 2174 aa9.42□□□□□ -0.9
USP28-201ENST00000003302 RP1L1Q8IWN7 2480 aaPredicted RBP9.42□□□□□ -0.9
USP28-201ENST00000003302 A0A1B0GV50 99 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 MELTFP08582 738 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 KCNJ3P48549 501 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 MMP16P51512 607 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 GMFBP60983 142 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 MPPED2Q15777 294 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 H1FNTQ75WM6 255 aaPredicted RBP9.41□□□□□ -0.9
USP28-201ENST00000003302 C6orf201Q7Z4U5 140 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 PIGTQ969N2 578 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 GPN3Q9UHW5 284 aaPredicted RBP9.41□□□□□ -0.9
USP28-201ENST00000003302 BET1O15155 118 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 TRAF3IP2O43734 574 aaPredicted RBP9.41□□□□□ -0.9
USP28-201ENST00000003302 CRTAPO75718 401 aaPredicted RBP9.41□□□□□ -0.9
USP28-201ENST00000003302 ISG15P05161 165 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 ACY1Q03154 408 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 SGCAQ16586 387 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 RPL7L1Q6DKI1 246 aaKnown RBP9.41□□□□□ -0.9
USP28-201ENST00000003302 EIF4E3Q8N5X7 224 aaKnown RBP9.41□□□□□ -0.9
USP28-201ENST00000003302 NFAM1Q8NET5 270 aaPredicted RBP9.41□□□□□ -0.9
USP28-201ENST00000003302 ASB17Q8WXJ9 295 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 ZNF385AQ96PM9 386 aaKnown RBP9.41□□□□□ -0.9
USP28-201ENST00000003302 KANTRA0A1W2PQU2 76 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 FBXO24O75426 580 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 ZNF432O94892 652 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 LAP3P28838 519 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 LPAR6P43657 344 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 HFEQ30201 348 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 ZNF468Q5VIY5 522 aaPredicted RBP9.41□□□□□ -0.9
USP28-201ENST00000003302 FAM122CQ6P4D5 195 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 ACOT7LQ6ZUV0 252 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 PPP1R3BQ86XI6 285 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 GNRHR2Q96P88 292 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 OR5B2Q96R09 309 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 MRI1Q9BV20 369 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 FBRSQ9HAH7 460 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 RCL1Q9Y2P8 373 aaKnown RBP9.41□□□□□ -0.9
USP28-201ENST00000003302 TRBV11-1A0A0K0K1C0 115 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 F5H5K5 113 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 MT-ATP6P00846 226 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 DAOP14920 347 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 ADH6P28332 368 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 STK11Q15831 433 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 IGFBP7Q16270 282 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 COL13A1Q5TAT6 717 aaPredicted RBP9.41□□□□□ -0.9
USP28-201ENST00000003302 TSTD1Q8NFU3 115 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 COPS7AQ9UBW8 275 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 COL12A1Q99715 3063 aa9.41□□□□□ -0.9
USP28-201ENST00000003302 TMEM218A2RU14 115 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 LMO7DNF2Z398 122 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 SLC33A1O00400 549 aaPredicted RBP9.4□□□□□ -0.9
USP28-201ENST00000003302 FARS2O95363 451 aaKnown RBP9.4□□□□□ -0.9
USP28-201ENST00000003302 CCR5P51681 352 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 RAB12Q6IQ22 244 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 HOGA1Q86XE5 327 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 SEMA6DQ8NFY4 1073 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 ZNF416Q9BWM5 594 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 KLRF1Q9NZS2 232 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 LILRA5A6NI73 299 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 TO15178 435 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 CDC14BO60729 498 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 MUC1P15941 1255 aaPredicted RBP9.4□□□□□ -0.9
USP28-201ENST00000003302 SERPINA2P20848 420 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 SLC6A8P48029 635 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 RIPPLY1Q0D2K3 151 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 ZNF529Q6P280 563 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 WDSUB1Q8N9V3 476 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 OR4K17Q8NGC6 315 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 MARS2Q96GW9 593 aaKnown RBP9.4□□□□□ -0.9
USP28-201ENST00000003302 ZC4H2Q9NQZ6 224 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 PIAS2O75928 621 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 IGLV3-19P01714 112 aa9.4□□□□□ -0.9
USP28-201ENST00000003302 PGA4P0DJD7 388 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms