RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 GIMAP2Q9UG22 337 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 MIOXQ9UGB7 285 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 LRRC42Q9Y546 428 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 FXYD6-FXYD2A0A087WZ82 144 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 A0A1W2PR80 420 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 E9PQ18 207 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 F5H0A9 414 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-218ENST00000640036 GUSBP08236 651 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 ADRA2AP08913 450 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 NFYAP23511 347 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-218ENST00000640036 RPL27P61353 136 aaKnown RBP4.51□□□□□ -1.69
SCN1A-218ENST00000640036 RGNQ15493 299 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 ADPRMQ3LIE5 342 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 AADACL3Q5VUY0 350 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 LAMTOR1Q6IAA8 161 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 OR1S1Q8NH92 325 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 ISOC1Q96CN7 298 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 OR5M11Q96RB7 305 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 PRRT1Q99946 306 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 FXYD6Q9H0Q3 95 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 MED17Q9NVC6 651 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF816-ZNF321PA0A0X1KG74 233 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF705FA8MVS1 300 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-218ENST00000640036 PLPP1O14494 284 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 HS3ST1O14792 307 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 NDUFA2O43678 99 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF705DP0CH99 300 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF705BP0CI00 300 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-218ENST00000640036 SULT1A2P50226 295 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 SQSTM1Q13501 440 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 PIN1Q13526 163 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-218ENST00000640036 SLC17A1Q14916 467 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 CPNE8Q86YQ8 564 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 SLC35G3Q8N808 338 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 OR13C8Q8NGS7 320 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 TOMM40LQ969M1 308 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 SLCO4A1Q96BD0 722 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 FOXN4Q96NZ1 517 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 PKP2Q99959 881 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 RAB33BQ9H082 229 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 FBXL17Q9UF56 701 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 CEPT1Q9Y6K0 416 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 A0A0U1RQK1 487 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF320A2RRD8 509 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 K7ESF4 209 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 BET1O15155 118 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 SHBQ15464 509 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 C3AR1Q16581 482 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 DUSP5Q16690 384 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 LBHQ53QV2 105 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-218ENST00000640036 CXorf66Q5JRM2 361 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-218ENST00000640036 MAMSTRQ6ZN01 415 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 SH2D5Q6ZV89 423 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 OR13J1Q8NGT2 312 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 C8orf46Q8TAG6 207 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 ZNF681Q96N22 645 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 SLC38A1Q9H2H9 487 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 TREX1Q9NSU2 369 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 ACER3Q9NUN7 267 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 FOXJ2Q9P0K8 574 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 TINAGQ9UJW2 476 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 UGT2A1Q9Y4X1 527 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 HELTA6NFD8 242 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 MOSPD3O75425 235 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 GPANK1O95872 356 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 THBS1P07996 1170 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 CD99P14209 185 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 RBP2P50120 134 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 METAP1P53582 386 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 TRMT12Q53H54 448 aaKnown RBP4.51□□□□□ -1.69
SCN1A-218ENST00000640036 UBE2UQ5VVX9 321 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 OGFOD3Q6PK18 319 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 PAQR6Q6TCH4 344 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 NHLRC1Q6VVB1 395 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 PPP1R32Q7Z5V6 425 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 KCNRGQ8N5I3 272 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 SMAP2Q8WU79 429 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-218ENST00000640036 POM121Q96HA1 1249 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 TMUB1Q9BVT8 246 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 SGPP1Q9BX95 441 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 DDX31Q9H8H2 851 aaKnown RBP4.51□□□□□ -1.69
SCN1A-218ENST00000640036 AIG1Q9NVV5 245 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 PLEKHB1Q9UF11 243 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-218ENST00000640036 A0A1W2PR48 441 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 SNNO75324 88 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-218ENST00000640036 DEDDO75618 318 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 APOBEC3AP31941 199 aaPredicted RBP4.51□□□□□ -1.69
SCN1A-218ENST00000640036 FOXF1Q12946 379 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 TCEAL1Q15170 157 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 IGFBP7Q16270 282 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 FBXW9Q5XUX1 488 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 RBPMS2Q6ZRY4 209 aaKnown RBP4.51□□□□□ -1.69
SCN1A-218ENST00000640036 SUMF2Q8NBJ7 301 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 SLC16A11Q8NCK7 471 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 ZNRF4Q8WWF5 429 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 SLC6A7Q99884 636 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 ST6GALNAC5Q9BVH7 336 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 SH3BGRL3Q9H299 93 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 LGALS13Q9UHV8 139 aa4.51□□□□□ -1.69
SCN1A-218ENST00000640036 TRAV27A0A087WT01 109 aa4.5□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms