RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 GABRG2P18507 467 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 OR3A4PP47883 348 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 GIPRP48546 466 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 MS4A2Q01362 244 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 SYPL1Q16563 259 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 SLAMF6Q96DU3 332 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 SEH1LQ96EE3 360 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 RHOFQ9HBH0 211 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 ZDHHC18Q9NUE0 388 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 IL36GQ9NZH8 169 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 TBX21Q9UL17 535 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 FZR1Q9UM11 496 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 POMT1Q9Y6A1 747 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 IGHV3-64DA0A0J9YX35 117 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 HOXC4P09017 264 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-217ENST00000637988 ACHEP22303 614 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 RFX2P48378 723 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 GNG10P50151 68 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 GNG3P63215 75 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 LEXMQ3ZCV2 418 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 ELFN2Q5R3F8 820 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 SIAH1Q8IUQ4 282 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 OR6M1Q8NGM8 313 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 GORASP2Q9H8Y8 452 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 FGF22Q9HCT0 170 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 WSB2Q9NYS7 404 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-217ENST00000637988 TAF1LQ8IZX4 1826 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 A0A1W2PNR3 127 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 ARPC1BO15143 372 aaKnown RBP5.55□□□□□ -1.52
SCN1A-217ENST00000637988 ITGBL1O95965 494 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-217ENST00000637988 CR2P20023 1033 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 EGR3Q06889 387 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 SYT14P1Q58G82 188 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 TM4SF18Q96CE8 201 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 VAPAQ9P0L0 249 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 EBF1Q9UH73 591 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 POMT2Q9UKY4 750 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 DAPP1Q9UN19 280 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 TMEM202A6NGA9 273 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 ADRA2CP18825 462 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 ATP5J2P56134 94 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 PPP1CBP62140 327 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 BAMBIQ13145 260 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 CLINT1Q14677 625 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 PCK2Q16822 640 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 RSPO4Q2I0M5 234 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-217ENST00000637988 ZDHHC24Q6UX98 284 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 ALKAL1Q6UXT8 129 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 PIK3IP1Q96FE7 263 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 ACY3Q96HD9 319 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 TMUB1Q9BVT8 246 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 WDR13Q9H1Z4 485 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 CXXC4Q9H2H0 198 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 CA10Q9NS85 328 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 A0A087WV62 115 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 SPTY2D1-AS1A0A0U1RR47 76 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 ZNF705GA8MUZ8 300 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-217ENST00000637988 NUPL2O15504 423 aaKnown RBP5.55□□□□□ -1.52
SCN1A-217ENST00000637988 LYRM1O43325 122 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 DNPH1O43598 174 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 TIMP4Q99727 224 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 SMAD7O15105 426 aaKnown RBP5.55□□□□□ -1.52
SCN1A-217ENST00000637988 ARG1P05089 322 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 LIPCP11150 499 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 ST6GAL1P15907 406 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 SRMP19623 302 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 RAB5AP20339 215 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 PCSK6P29122 969 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 RPL30P62888 115 aaKnown RBP5.55□□□□□ -1.52
SCN1A-217ENST00000637988 OR10K2Q6IF99 312 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 IL22RA2Q969J5 263 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 LHX9Q9NQ69 397 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 SIRT3Q9NTG7 399 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-217ENST00000637988 COL11A1P12107 1806 aaPredicted RBP5.55□□□□□ -1.52
SCN1A-217ENST00000637988 SCN8AQ9UQD0 1980 aa5.55□□□□□ -1.52
SCN1A-217ENST00000637988 SCGB1C2P0DMR2 95 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 HTR1FP30939 366 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 SDHAP31040 664 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 MLF1P58340 268 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 GUCA2BQ16661 112 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 DOLPP1Q86YN1 238 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 C1orf174Q8IYL3 243 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 SLC38A6Q8IZM9 456 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 COQ10AQ96MF6 247 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 TINAGL1Q9GZM7 467 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-217ENST00000637988 FBXO34Q9NWN3 711 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 TXNL4BQ9NX01 149 aaKnown RBP5.54□□□□□ -1.52
SCN1A-217ENST00000637988 PRDM4Q9UKN5 801 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 ZFC3H1O60293 1989 aaKnown RBP5.54□□□□□ -1.52
SCN1A-217ENST00000637988 AQP7P3A6NL99 342 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 ADAM20O43506 726 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 SOD1P00441 154 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 CXCL10P02778 98 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 RPS17P08708 135 aaKnown RBP5.54□□□□□ -1.52
SCN1A-217ENST00000637988 MLLT11Q13015 90 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-217ENST00000637988 WDR74Q6RFH5 385 aaPredicted RBP5.54□□□□□ -1.52
SCN1A-217ENST00000637988 CALHM3Q86XJ0 350 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 SLC38A9Q8NBW4 561 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 LFNGQ8NES3 379 aa5.54□□□□□ -1.52
SCN1A-217ENST00000637988 NUDT8Q8WV74 236 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms