RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 PHF3Q92576 2039 aaKnown RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 RIF1Q5UIP0 2472 aaKnown RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 FER1L5A0AVI2 2057 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 A0A0B4J2A0 478 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 SPTY2D1-AS1A0A0U1RR47 76 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ICOSLGO75144 302 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ISG15P05161 165 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 JMJD7P0C870 316 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF28P17035 718 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 AKR1C4P17516 323 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 APOBEC1P41238 236 aaKnown RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 EMP2P54851 167 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 RRADP55042 308 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 NAAAQ02083 359 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 PCOLCEQ15113 449 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 FAM76BQ5HYJ3 339 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 TMEM255AQ5JRV8 349 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 TEX30Q5JUR7 227 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 PARM1Q6UWI2 310 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 H1FNTQ75WM6 255 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ACBD4Q8NC06 268 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 OR1M1Q8NGA1 313 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 OR4K15Q8NH41 348 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 OR1S1Q8NH92 325 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 TGM7Q96PF1 710 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 SLC6A7Q99884 636 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 REG4Q9BYZ8 158 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 PLA2G2FQ9BZM2 168 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 NXF5Q9H1B4 397 aaKnown RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 SHPKQ9UHJ6 478 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 SLC22A13Q9Y226 551 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 LRP12Q9Y561 859 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 WIF1Q9Y5W5 379 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 CELSR3Q9NYQ7 3312 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 THADAQ6YHU6 1953 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 NPIPB13A6NJU9 1138 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 NPIPB4C9JG80 1138 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 H3BSH0 61 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ABCD4O14678 606 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 SIGLEC6O43699 453 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 DUS4LO95620 317 aaKnown RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 HCKP08631 526 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ITGA5P08648 1049 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ACAA1P09110 424 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 PTHLHP12272 177 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 PGAM2P15259 253 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 MSX1P28360 303 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 H2BFSP57053 126 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 CLRN1P58418 232 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 RAB5BP61020 215 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF117Q03924 483 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 SRSF4Q08170 494 aaKnown RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 TRA2AQ13595 282 aaKnown RBP eCLIP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 NSDHLQ15738 373 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 CD226Q15762 336 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 LINC01559Q495D7 138 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 PDSS1Q5T2R2 415 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 OGFOD3Q6PK18 319 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 SPNS3Q6ZMD2 512 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 DGAT2L6Q6ZPD8 337 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 TTLL10Q6ZVT0 673 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 MOB3CQ70IA8 216 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 PLXDC1Q8IUK5 500 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 PRSS35Q8N3Z0 413 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 METTL27Q8N6F8 245 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 OR5L2Q8NGL0 311 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 MITD1Q8WV92 249 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 PPP1R1CQ8WVI7 109 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ARSGQ96EG1 525 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 MAP3K3Q99759 626 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 NMES1Q9C002 83 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 TINAGL1Q9GZM7 467 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 CHRNA10Q9GZZ6 450 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 GHRLQ9UBU3 117 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF629Q9UEG4 869 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 CGGBP1Q9UFW8 167 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 GDF2Q9UK05 429 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF175Q9Y473 711 aa3.56□□□□□ -1.84
SCN1A-214ENST00000637038 TNRC6BQ9UPQ9 1833 aaKnown RBP3.55□□□□□ -1.84
SCN1A-214ENST00000637038 MYO10Q9HD67 2058 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 BORCS7-ASMTA0A0B4J1R7 106 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 A0A1W2PQF6 199 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 TMEM235A6NFC5 223 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF726A6NNF4 738 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 DUX1O43812 170 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 GMFGO60234 142 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 TMIGD3P0DMS9 266 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-214ENST00000637038 HLA-GP17693 338 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 FKBP2P26885 142 aaKnown RBP3.55□□□□□ -1.84
SCN1A-214ENST00000637038 PRSS12P56730 875 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 S100A12P80511 92 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 C17orf67Q0P5P2 114 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 C1orf61Q13536 156 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 C3orf33Q6P1S2 294 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 DCXRQ7Z4W1 244 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 CD163Q86VB7 1156 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF761Q86XN6 746 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-214ENST00000637038 UEVLDQ8IX04 471 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 BAP18Q8IXM2 172 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 MFSD8Q8NHS3 518 aa3.55□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms