RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 LIPAP38571 399 aa15.16■□□□□ 0.02
CLN3-247ENST00000636351 ADARB1P78563 741 aaKnown RBP15.16■□□□□ 0.02
CLN3-247ENST00000636351 GK2Q14410 553 aaPredicted RBP15.16■□□□□ 0.02
CLN3-247ENST00000636351 ZNF829Q3KNS6 432 aaPredicted RBP15.16■□□□□ 0.02
CLN3-247ENST00000636351 DEGS2Q6QHC5 323 aa15.16■□□□□ 0.02
CLN3-247ENST00000636351 IL17RELQ6ZVW7 336 aa15.16■□□□□ 0.02
CLN3-247ENST00000636351 USP51Q70EK9 711 aa15.16■□□□□ 0.02
CLN3-247ENST00000636351 ZNF679Q8IYX0 411 aa15.16■□□□□ 0.02
CLN3-247ENST00000636351 C8orf59Q8N0T1 100 aaPredicted RBP15.16■□□□□ 0.02
CLN3-247ENST00000636351 OR52H1Q8NGJ2 320 aa15.16■□□□□ 0.02
CLN3-247ENST00000636351 CNIH3Q8TBE1 160 aa15.16■□□□□ 0.02
CLN3-247ENST00000636351 MSL2Q9HCI7 577 aa15.16■□□□□ 0.02
CLN3-247ENST00000636351 GTF2A1LQ9UNN4 478 aa15.16■□□□□ 0.02
CLN3-247ENST00000636351 RRP15Q9Y3B9 282 aaKnown RBP15.16■□□□□ 0.02
CLN3-247ENST00000636351 NBEAL1Q6ZS30 2694 aa15.16■□□□□ 0.02
CLN3-247ENST00000636351 C5orf63A6NC05 138 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 GGT3PA6NGU5 568 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 ZSCAN5BA6NJL1 495 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 PRR32B1ATL7 298 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 H0YAE9 185 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 ZNF254O75437 659 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 DBTP11182 482 aaKnown RBP15.15■□□□□ 0.02
CLN3-247ENST00000636351 ANOS1P23352 680 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 MAGEB1P43366 347 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 GZMKP49863 264 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 PDLIM4P50479 330 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 AQP4P55087 323 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 ACTC1P68032 377 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 ACTA1P68133 377 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 SRSF2Q01130 221 aaKnown RBP15.15■□□□□ 0.02
CLN3-247ENST00000636351 ROM1Q03395 351 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 ZNF92Q03936 586 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 EGR3Q06889 387 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 IL18R1Q13478 541 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 TSTQ16762 297 aaKnown RBP15.15■□□□□ 0.02
CLN3-247ENST00000636351 PCGF3Q3KNV8 242 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 SSX6Q7RTT6 188 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 APH1BQ8WW43 257 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 SPRYD4Q8WW59 207 aaPredicted RBP15.15■□□□□ 0.02
CLN3-247ENST00000636351 OPA3Q9H6K4 179 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 AMBNQ9NP70 447 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 DECR2Q9NUI1 292 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 KCNS2Q9ULS6 477 aa15.15■□□□□ 0.02
CLN3-247ENST00000636351 RPL36Q9Y3U8 105 aaKnown RBP15.15■□□□□ 0.02
CLN3-247ENST00000636351 TMEM269A0A1B0GVZ9 245 aa15.14■□□□□ 0.01
CLN3-247ENST00000636351 VWC2LB2RUY7 222 aa15.14■□□□□ 0.01
CLN3-247ENST00000636351 MAGEB4O15481 346 aaPredicted RBP15.14■□□□□ 0.01
CLN3-247ENST00000636351 DAOP14920 347 aa15.14■□□□□ 0.01
CLN3-247ENST00000636351 SRD5A1P18405 259 aa15.14■□□□□ 0.01
CLN3-247ENST00000636351 MMP15P51511 669 aa15.14■□□□□ 0.01
CLN3-247ENST00000636351 CCL8P80075 99 aa15.14■□□□□ 0.01
CLN3-247ENST00000636351 RIPK1Q13546 671 aa15.14■□□□□ 0.01
CLN3-247ENST00000636351 FAM166AQ6J272 317 aa15.14■□□□□ 0.01
CLN3-247ENST00000636351 FAM220AQ7Z4H9 259 aa15.14■□□□□ 0.01
CLN3-247ENST00000636351 COMMD2Q86X83 199 aa15.14■□□□□ 0.01
CLN3-247ENST00000636351 YIPF7Q8N8F6 280 aa15.14■□□□□ 0.01
CLN3-247ENST00000636351 MSI2Q96DH6 328 aaKnown RBP15.14■□□□□ 0.01
CLN3-247ENST00000636351 LGALS12Q96DT0 336 aa15.14■□□□□ 0.01
CLN3-247ENST00000636351 REEP6Q96HR9 211 aa15.14■□□□□ 0.01
CLN3-247ENST00000636351 PIMREGQ9BSJ6 248 aa15.14■□□□□ 0.01
CLN3-247ENST00000636351 C19orf24Q9BVV8 132 aa15.14■□□□□ 0.01
CLN3-247ENST00000636351 MYOZ1Q9NP98 299 aaPredicted RBP15.14■□□□□ 0.01
CLN3-247ENST00000636351 PCDHGB1Q9Y5G3 927 aa15.14■□□□□ 0.01
CLN3-247ENST00000636351 ANK2Q01484 3957 aa15.14■□□□□ 0.01
CLN3-247ENST00000636351 LOC100289279A0A1B0GTE1 492 aa15.13■□□□□ 0.01
CLN3-247ENST00000636351 DAPL1A0PJW8 107 aa15.13■□□□□ 0.01
CLN3-247ENST00000636351 IQCF6A8MYZ5 107 aa15.13■□□□□ 0.01
CLN3-247ENST00000636351 NCR1O76036 304 aa15.13■□□□□ 0.01
CLN3-247ENST00000636351 RPP14O95059 124 aaKnown RBP15.13■□□□□ 0.01
CLN3-247ENST00000636351 IGHV1-46P01743 117 aa15.13■□□□□ 0.01
CLN3-247ENST00000636351 GNAO1P09471 354 aa15.13■□□□□ 0.01
CLN3-247ENST00000636351 TNFSF4P23510 183 aa15.13■□□□□ 0.01
CLN3-247ENST00000636351 NR4A2P43354 598 aa15.13■□□□□ 0.01
CLN3-247ENST00000636351 SMN1Q16637 294 aaKnown RBP15.13■□□□□ 0.01
CLN3-247ENST00000636351 FAM120AOSQ5T036 256 aa15.13■□□□□ 0.01
CLN3-247ENST00000636351 PLEKHG7Q6ZR37 379 aa15.13■□□□□ 0.01
CLN3-247ENST00000636351 OR8G5Q8NG78 346 aa15.13■□□□□ 0.01
CLN3-247ENST00000636351 OR2Z1Q8NG97 314 aa15.13■□□□□ 0.01
CLN3-247ENST00000636351 OR8B12Q8NGG6 310 aa15.13■□□□□ 0.01
CLN3-247ENST00000636351 UBASH3BQ8TF42 649 aa15.13■□□□□ 0.01
CLN3-247ENST00000636351 ELMOD3Q96FG2 381 aa15.13■□□□□ 0.01
CLN3-247ENST00000636351 MRPL48Q96GC5 212 aaKnown RBP15.13■□□□□ 0.01
CLN3-247ENST00000636351 SAP30LQ9HAJ7 183 aa15.13■□□□□ 0.01
CLN3-247ENST00000636351 MRM2Q9UI43 246 aaKnown RBP15.13■□□□□ 0.01
CLN3-247ENST00000636351 ZDHHC8Q9ULC8 765 aa15.13■□□□□ 0.01
CLN3-247ENST00000636351 IGHV4-61A0A0C4DH41 118 aa15.12■□□□□ 0.01
CLN3-247ENST00000636351 CD300LBA8K4G0 201 aa15.12■□□□□ 0.01
CLN3-247ENST00000636351 LOC110117498-PIK3R3F6TDL0 507 aa15.12■□□□□ 0.01
CLN3-247ENST00000636351 NDUFS8O00217 210 aa15.12■□□□□ 0.01
CLN3-247ENST00000636351 RRP9O43818 475 aaKnown RBP15.12■□□□□ 0.01
CLN3-247ENST00000636351 WBP4O75554 376 aaKnown RBP15.12■□□□□ 0.01
CLN3-247ENST00000636351 HPXP02790 462 aa15.12■□□□□ 0.01
CLN3-247ENST00000636351 CFL1P23528 166 aaKnown RBP15.12■□□□□ 0.01
CLN3-247ENST00000636351 THBS2P35442 1172 aa15.12■□□□□ 0.01
CLN3-247ENST00000636351 TNFAIP6P98066 277 aaPredicted RBP15.12■□□□□ 0.01
CLN3-247ENST00000636351 MFGE8Q08431 387 aaPredicted RBP15.12■□□□□ 0.01
CLN3-247ENST00000636351 FAM209AQ5JX71 171 aa15.12■□□□□ 0.01
CLN3-247ENST00000636351 BCL2L15Q5TBC7 163 aa15.12■□□□□ 0.01
CLN3-247ENST00000636351 IZUMO2Q6UXV1 221 aa15.12■□□□□ 0.01
CLN3-247ENST00000636351 PRSS45Q7RTY3 260 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms