RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 TMPPEQ6ZT21 453 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 CMTM1Q8IZ96 169 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 IQCKQ8N0W5 287 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 ZCCHC7Q8N3Z6 543 aaKnown RBP0.71□□□□□ -2.3
SCN1A-208ENST00000625916 C19orf18Q8NEA5 215 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 NUBPLQ8TB37 319 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 SLC2A14Q8TDB8 520 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 RERGQ96A58 199 aaPredicted RBP0.71□□□□□ -2.3
SCN1A-208ENST00000625916 TRIM44Q96DX7 344 aaPredicted RBP0.71□□□□□ -2.3
SCN1A-208ENST00000625916 IGF2BP2-AS1Q96M15 143 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 RNF145Q96MT1 663 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 ZBTB18Q99592 522 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 TOLLIPQ9H0E2 274 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 ZNF302Q9NR11 478 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 HES2Q9Y543 173 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 DENND4AQ7Z401 1863 aa0.71□□□□□ -2.3
SCN1A-208ENST00000625916 PCDH11XQ9BZA7 1347 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 RPRD2Q5VT52 1461 aaKnown RBP0.7□□□□□ -2.3
SCN1A-208ENST00000625916 IGLV10-54A0A075B6I4 117 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 IGKV1-27A0A075B6S5 117 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 IGHV3OR16-9A0A0B4J2B5 98 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 ISPDA4D126 451 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 C15orf65H3BRN8 121 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 K7EMT4 169 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 CLOCKO15516 846 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 FSTL3O95633 263 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 MAS1P04201 325 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 IGKV1-16P04430 117 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 SLC2A3P11169 496 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 IFI30P13284 250 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 NELFEP18615 380 aaKnown RBP0.7□□□□□ -2.3
SCN1A-208ENST00000625916 MYL9P24844 172 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 MPIP34949 423 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 FUSP35637 526 aaKnown RBP eCLIP0.7□□□□□ -2.3
SCN1A-208ENST00000625916 TGM4P49221 684 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 NDUFA8P51970 172 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 CHIT1Q13231 466 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 NAB1Q13506 487 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 TPBGQ13641 420 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 ZMYND11Q15326 602 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 TAF7Q15545 349 aaPredicted RBP0.7□□□□□ -2.3
SCN1A-208ENST00000625916 SLC9A3R2Q15599 337 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 SLC8B1Q6J4K2 584 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 WDR59Q6PJI9 974 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 FAM131AQ6UXB0 335 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 TMPRSS11AQ6ZMR5 421 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 Q6ZSR6 202 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 PPP1R42Q7Z4L9 355 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 ORMDL3Q8N138 153 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 NECAB1Q8N987 351 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 OR52N1Q8NH53 320 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 ENKURQ8TC29 256 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 ACTL9Q8TC94 416 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 RXFP4Q8TDU9 374 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 BTN2A3PQ96KV6 586 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 C18orf15Q96N68 181 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 OR2V2Q96R30 315 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 OR4K3Q96R72 315 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 RACGAP1Q9H0H5 632 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 DSN1Q9H410 356 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 RETNQ9HD89 108 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 RRAGDQ9NQL2 400 aaPredicted RBP0.7□□□□□ -2.3
SCN1A-208ENST00000625916 SLC39A1Q9NY26 324 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 CLN8Q9UBY8 286 aa0.7□□□□□ -2.3
SCN1A-208ENST00000625916 H7C0C1 242 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 M0R1X1 148 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 SIRPB1O00241 398 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 SCAMP2O15127 329 aaKnown RBP0.69□□□□□ -2.3
SCN1A-208ENST00000625916 SYNGR2O43760 224 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 NMT2O60551 498 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 RAD1O60671 282 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 OR2J3O76001 311 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 AQP8O94778 261 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 TGM6O95932 706 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 SERPINA3P01011 423 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 NRASP01111 189 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 HRASP01112 189 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 KRASP01116 189 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 THRAP10827 490 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 CBR1P16152 277 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 CTRB1P17538 263 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 CSNK2A2P19784 350 aaPredicted RBP0.69□□□□□ -2.3
SCN1A-208ENST00000625916 EIF2S2P20042 333 aaKnown RBP0.69□□□□□ -2.3
SCN1A-208ENST00000625916 RRM2P31350 389 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 CD70P32970 193 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 ATP5OP48047 213 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 HNMTP50135 292 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 RAB7AP51149 207 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 KLF3P57682 345 aaPredicted RBP0.69□□□□□ -2.3
SCN1A-208ENST00000625916 ZNF121P58317 390 aaPredicted RBP0.69□□□□□ -2.3
SCN1A-208ENST00000625916 TRAM2Q15035 370 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 SSX2Q16385 188 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 ZNF829Q3KNS6 432 aaPredicted RBP0.69□□□□□ -2.3
SCN1A-208ENST00000625916 ZNF660Q6AZW8 331 aaPredicted RBP0.69□□□□□ -2.3
SCN1A-208ENST00000625916 ZNF470Q6ECI4 717 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 REEP3Q6NUK4 255 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 SLC16A14Q7RTX9 510 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 PAGE2Q7Z2X7 111 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 DRAM1Q8N682 238 aa0.69□□□□□ -2.3
SCN1A-208ENST00000625916 TEX9Q8N6V9 391 aa0.69□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms