RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 K7EPK0 472 aa9.66□□□□□ -0.86
UPF3A-212ENST00000619079 DLL1O00548 723 aa9.66□□□□□ -0.86
UPF3A-212ENST00000619079 TBC1D3HP0C7X1 549 aa9.66□□□□□ -0.86
UPF3A-212ENST00000619079 S100A10P60903 97 aa9.66□□□□□ -0.86
UPF3A-212ENST00000619079 CLINT1Q14677 625 aa9.66□□□□□ -0.86
UPF3A-212ENST00000619079 ZNHIT3Q15649 155 aaPredicted RBP9.66□□□□□ -0.86
UPF3A-212ENST00000619079 HYAL4Q2M3T9 481 aa9.66□□□□□ -0.86
UPF3A-212ENST00000619079 HNRNPA1L2Q32P51 320 aaKnown RBP9.66□□□□□ -0.86
UPF3A-212ENST00000619079 TMEM31Q5JXX7 168 aa9.66□□□□□ -0.86
UPF3A-212ENST00000619079 CLEC18BQ6UXF7 455 aa9.66□□□□□ -0.86
UPF3A-212ENST00000619079 ZAR1Q86SH2 424 aa9.66□□□□□ -0.86
UPF3A-212ENST00000619079 SPEM1Q8N4L4 309 aa9.66□□□□□ -0.86
UPF3A-212ENST00000619079 FAM71E2Q8N5Q1 922 aa9.66□□□□□ -0.86
UPF3A-212ENST00000619079 TMEM105Q8N8V8 129 aa9.66□□□□□ -0.86
UPF3A-212ENST00000619079 CHST4Q8NCG5 386 aa9.66□□□□□ -0.86
UPF3A-212ENST00000619079 OR52E1Q8NGJ3 308 aa9.66□□□□□ -0.86
UPF3A-212ENST00000619079 OR13D1Q8NGV5 346 aa9.66□□□□□ -0.86
UPF3A-212ENST00000619079 OR51F2Q8NH61 342 aa9.66□□□□□ -0.86
UPF3A-212ENST00000619079 CNTNAP3Q9BZ76 1288 aa9.66□□□□□ -0.86
UPF3A-212ENST00000619079 COLEC10Q9Y6Z7 277 aa9.66□□□□□ -0.86
UPF3A-212ENST00000619079 EDDM13A0A1B0GTR0 161 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 A0A1B0GW64 132 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 TCRBV21S2A2A0A5A6 115 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 DCDC2BA2VCK2 349 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 H7C1Q1 480 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 SEC11BP0C7V7 166 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 PNMTP11086 282 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 CXCR1P25024 350 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 RPL12P30050 165 aaKnown RBP9.65□□□□□ -0.86
UPF3A-212ENST00000619079 CEACAM6P40199 344 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 CXCL12P48061 93 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 SUCLG1P53597 346 aaKnown RBP9.65□□□□□ -0.86
UPF3A-212ENST00000619079 IL15RAQ13261 267 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 ZNF141Q15928 474 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 MEP1BQ16820 701 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 PRICKLE4Q2TBC4 344 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 VAX1Q5SQQ9 334 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 SLC18B1Q6NT16 456 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 KCTD18Q6PI47 426 aaPredicted RBP9.65□□□□□ -0.86
UPF3A-212ENST00000619079 SYT13Q7L8C5 426 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 VN1R4Q7Z5H5 301 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 C10orf53Q8N6V4 93 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 GVQW1Q8N7I0 195 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 LRRC75AQ8NAA5 344 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 TSTD1Q8NFU3 115 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 OR4K15Q8NH41 348 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 ROBO4Q8WZ75 1007 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 HOXB13Q92826 284 aaPredicted RBP9.65□□□□□ -0.86
UPF3A-212ENST00000619079 NEU1Q99519 415 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 LYRM4Q9HD34 91 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 GPR132Q9UNW8 380 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 STRAPQ9Y3F4 350 aaKnown RBP9.65□□□□□ -0.86
UPF3A-212ENST00000619079 OR1A2Q9Y585 309 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.65□□□□□ -0.86
UPF3A-212ENST00000619079 LAMTOR5O43504 91 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 ZNF354AO60765 605 aaPredicted RBP9.65□□□□□ -0.86
UPF3A-212ENST00000619079 DANCRP0C864 163 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 SFTPCP11686 197 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 METAP1P53582 386 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 NKX6-1P78426 367 aaPredicted RBP9.65□□□□□ -0.86
UPF3A-212ENST00000619079 HSD11B2P80365 405 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 ROM1Q03395 351 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 ZNF616Q08AN1 781 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 ZNF74Q16587 644 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 OR2A2Q6IF42 318 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 ZNF440Q8IYI8 595 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 OR5R1Q8NH85 324 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 NKD1Q969G9 470 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 RAB24Q969Q5 203 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 GABRG3Q99928 467 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 LMF2Q9BU23 707 aaKnown RBP9.65□□□□□ -0.86
UPF3A-212ENST00000619079 SCRT1Q9BWW7 348 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 SRMSQ9H3Y6 488 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 FBXL17Q9UF56 701 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 HHLA2Q9UM44 414 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 SLC22A13Q9Y226 551 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 CUL9Q8IWT3 2517 aa9.65□□□□□ -0.86
UPF3A-212ENST00000619079 A0A087WWC5 75 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 BORCS7-ASMTA0A0B4J1R7 106 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 OR5H15A6NDH6 313 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 CXorf65A6NEN9 183 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 OR5H1A6NKK0 313 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 PRR33A8MZF0 331 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 MKRN2OSH3BPM6 223 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 SYT7O43581 403 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 GPR75O95800 540 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 PCCBP05166 539 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 PAX1P15863 534 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 FPR2P25090 351 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 ID4P47928 161 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 ID2Q02363 134 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 RUNX2Q13950 521 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 GAMTQ14353 236 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 ELAVL3Q14576 367 aaKnown RBP9.64□□□□□ -0.87
UPF3A-212ENST00000619079 EXOSC7Q15024 291 aaKnown RBP9.64□□□□□ -0.87
UPF3A-212ENST00000619079 SLC9A3R2Q15599 337 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 DEFB134Q4QY38 66 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 CLEC9AQ6UXN8 241 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 TMEM92Q6UXU6 159 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 RNF44Q7L0R7 432 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms