RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 OR13C8Q8NGS7 320 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 ASB13Q8WXK3 278 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 MCHR2Q969V1 340 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 CHRDQ9H2X0 955 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 PLEK2Q9NYT0 353 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 CD207Q9UJ71 328 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 LAMA3Q16787 3333 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 TRAV20A0A0B4J274 112 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 IGHV5-51A0A0C4DH38 117 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 RAB19A4D1S5 217 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 EIF4E2O60573 245 aaKnown RBP11.26□□□□□ -0.61
LIG1-221ENST00000613670 ZNF205O95201 554 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 CCNOP22674 350 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 GLP1RP43220 463 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 CX3CR1P49238 355 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 GPR85P60893 370 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 ACY1Q03154 408 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 CLINT1Q14677 625 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 TSC22D1Q15714 1073 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 TMEM176BQ3YBM2 270 aaPredicted RBP11.26□□□□□ -0.61
LIG1-221ENST00000613670 OR51F2Q8NH61 342 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 MITD1Q8WV92 249 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 DMRTA2Q96SC8 542 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 SLC5A6Q9Y289 635 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 B3GALT5Q9Y2C3 310 aa11.26□□□□□ -0.61
LIG1-221ENST00000613670 A0A1W2PP11 408 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 IGHG1P01857 330 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 MYF5P13349 255 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 ZNF44P15621 663 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 RPL12P30050 165 aaKnown RBP11.25□□□□□ -0.61
LIG1-221ENST00000613670 DCAF7P61962 342 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 HSD11B2P80365 405 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 DHODHQ02127 395 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 SP6Q3SY56 376 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 PRAMEF20Q5VT98 475 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 TMEM92Q6UXU6 159 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 ZDHHC22Q8N966 263 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 SUMF1Q8NBK3 374 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 PIK3IP1Q96FE7 263 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 USB1Q9BQ65 265 aaKnown RBP11.25□□□□□ -0.61
LIG1-221ENST00000613670 URGCP-MRPS24S4R325 110 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 KNTC1P50748 2209 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 HSPB2A8KAH6 182 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 ABHD16AO95870 558 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 ABCD3P28288 659 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 MEOX2P50222 304 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 GABREP78334 506 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 HSPB2Q16082 182 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 EIF2S3LQ2VIR3 472 aaKnown RBP11.25□□□□□ -0.61
LIG1-221ENST00000613670 LY6G6FQ5SQ64 297 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 CATSPERDQ86XM0 798 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 VWCEQ96DN2 955 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 KLHDC3Q9BQ90 382 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 CNTNAP3Q9BZ76 1288 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 NKX2-4Q9H2Z4 354 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 ZNF442Q9H7R0 627 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 SLC2A4RGQ9NR83 387 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 MRPL22Q9NWU5 206 aaKnown RBP11.25□□□□□ -0.61
LIG1-221ENST00000613670 KCNK7Q9Y2U2 307 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 FLVCR1Q9Y5Y0 555 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 VSIG8P0DPA2 414 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 IL11P20809 199 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 DRD1P21728 446 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 FUT7Q11130 342 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 OGFOD3Q6PK18 319 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 TMPPEQ6ZT21 453 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 LANCL3Q6ZV70 420 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 MOB3CQ70IA8 216 aa11.25□□□□□ -0.61
LIG1-221ENST00000613670 CPEB2Q7Z5Q1 589 aaKnown RBP11.25□□□□□ -0.61
LIG1-221ENST00000613670 FAM212BQ9NTI7 297 aaPredicted RBP11.25□□□□□ -0.61
LIG1-221ENST00000613670 A0A1W2PQF6 199 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 SULT2B1O00204 365 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 GNRHRP30968 328 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 OR3A4PP47883 348 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 ASCL1P50553 236 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 TAS2R46P59540 309 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 RAB2AP61019 212 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 RPS4XP62701 263 aaKnown RBP11.24□□□□□ -0.61
LIG1-221ENST00000613670 PPA1Q15181 289 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 ADAT3Q96EY9 351 aaPredicted RBP11.24□□□□□ -0.61
LIG1-221ENST00000613670 GPX7Q96SL4 187 aaPredicted RBP11.24□□□□□ -0.61
LIG1-221ENST00000613670 ZNF2Q9BSG1 426 aaPredicted RBP11.24□□□□□ -0.61
LIG1-221ENST00000613670 PBDC1Q9BVG4 233 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 C1orf123Q9NWV4 160 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 NXT1Q9UKK6 140 aaKnown RBP11.24□□□□□ -0.61
LIG1-221ENST00000613670 BLACEA4D250 179 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 OR6C65A6NJZ3 312 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 RCC1P18754 421 aaPredicted RBP11.24□□□□□ -0.61
LIG1-221ENST00000613670 PRSS12P56730 875 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 OR1D5P58170 312 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 CLEC18BQ6UXF7 455 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 OR2I1PQ8NGU4 316 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 RXFP4Q8TDU9 374 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 SFT2D1Q8WV19 159 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 SECTM1Q8WVN6 248 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 C2orf50Q96LR7 162 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 DEFB126Q9BYW3 111 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 MMP26Q9NRE1 261 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 LUZP4Q9P127 313 aa11.24□□□□□ -0.61
LIG1-221ENST00000613670 PCOLCE2Q9UKZ9 415 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms