RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 ASB17Q8WXJ9 295 aa12.87□□□□□ -0.35
LIG1-219ENST00000600055 DVL3Q92997 716 aaPredicted RBP12.87□□□□□ -0.35
LIG1-219ENST00000600055 MEGF10Q96KG7 1140 aa12.87□□□□□ -0.35
LIG1-219ENST00000600055 MROQ9BYG7 248 aa12.87□□□□□ -0.35
LIG1-219ENST00000600055 SP140LQ9H930 580 aa12.87□□□□□ -0.35
LIG1-219ENST00000600055 IL19Q9UHD0 177 aa12.87□□□□□ -0.35
LIG1-219ENST00000600055 RRP15Q9Y3B9 282 aaKnown RBP12.87□□□□□ -0.35
LIG1-219ENST00000600055 hCG_38984A0A1B0GV85 526 aa12.86□□□□□ -0.35
LIG1-219ENST00000600055 A0A1B0GWJ7 208 aa12.86□□□□□ -0.35
LIG1-219ENST00000600055 CD5LO43866 347 aa12.86□□□□□ -0.35
LIG1-219ENST00000600055 ZNF16P17020 682 aaPredicted RBP12.86□□□□□ -0.35
LIG1-219ENST00000600055 GABRB1P18505 474 aa12.86□□□□□ -0.35
LIG1-219ENST00000600055 CHN2P52757 468 aa12.86□□□□□ -0.35
LIG1-219ENST00000600055 MFGE8Q08431 387 aaPredicted RBP12.86□□□□□ -0.35
LIG1-219ENST00000600055 RIPK1Q13546 671 aa12.86□□□□□ -0.35
LIG1-219ENST00000600055 OCLNQ16625 522 aa12.86□□□□□ -0.35
LIG1-219ENST00000600055 SLC25A30Q5SVS4 291 aa12.86□□□□□ -0.35
LIG1-219ENST00000600055 DEGS2Q6QHC5 323 aa12.86□□□□□ -0.35
LIG1-219ENST00000600055 PLEKHG7Q6ZR37 379 aa12.86□□□□□ -0.35
LIG1-219ENST00000600055 OR52H1Q8NGJ2 320 aa12.86□□□□□ -0.35
LIG1-219ENST00000600055 CLDND2Q8NHS1 167 aa12.86□□□□□ -0.35
LIG1-219ENST00000600055 RFKQ969G6 155 aa12.86□□□□□ -0.35
LIG1-219ENST00000600055 PPP1R14AQ96A00 147 aa12.86□□□□□ -0.35
LIG1-219ENST00000600055 LYZL4Q96KX0 146 aa12.86□□□□□ -0.35
LIG1-219ENST00000600055 MNTQ99583 582 aa12.86□□□□□ -0.35
LIG1-219ENST00000600055 NIPAL2Q9H841 368 aa12.86□□□□□ -0.35
LIG1-219ENST00000600055 C8orf4Q9NR00 106 aa12.86□□□□□ -0.35
LIG1-219ENST00000600055 FAM206AQ9NX38 181 aa12.86□□□□□ -0.35
LIG1-219ENST00000600055 SMPD3Q9NY59 655 aaPredicted RBP12.86□□□□□ -0.35
LIG1-219ENST00000600055 MRM2Q9UI43 246 aaKnown RBP12.86□□□□□ -0.35
LIG1-219ENST00000600055 WIPI2Q9Y4P8 454 aa12.86□□□□□ -0.35
LIG1-219ENST00000600055 TMEM269A0A1B0GVZ9 245 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 A0A1W2PQL4 384 aaPredicted RBP12.85□□□□□ -0.35
LIG1-219ENST00000600055 CLDN25C9JDP6 229 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 INAFM1C9JVW0 142 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 ZNF254O75437 659 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 PNPP00491 289 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 TNFRSF1AP19438 455 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 ATP6V1E1P36543 226 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 GSK3AP49840 483 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 RIDAP52758 137 aaKnown RBP12.85□□□□□ -0.35
LIG1-219ENST00000600055 POU4F2Q12837 409 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 MAB21L1Q13394 359 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 TMED1Q13445 227 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 OR8G1Q15617 311 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 CYB5R2Q6BCY4 276 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 OR10H4Q8NGA5 316 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 RHOXF1Q8NHV9 184 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 ZNF420Q8TAQ5 688 aaPredicted RBP12.85□□□□□ -0.35
LIG1-219ENST00000600055 RNFT2Q96EX2 444 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 OPA3Q9H6K4 179 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 PPP1R3EQ9H7J1 279 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 GCM1Q9NP62 436 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 YAE1D1Q9NRH1 226 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 TMEM106BQ9NUM4 274 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 NKX1-2Q9UD57 310 aaPredicted RBP12.85□□□□□ -0.35
LIG1-219ENST00000600055 PPP1R3CQ9UQK1 317 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 ZANQ9Y493 2812 aa12.85□□□□□ -0.35
LIG1-219ENST00000600055 PHYHO14832 338 aa12.84□□□□□ -0.35
LIG1-219ENST00000600055 SLC16A6O15403 523 aa12.84□□□□□ -0.35
LIG1-219ENST00000600055 SRSF10O75494 262 aaKnown RBP12.84□□□□□ -0.35
LIG1-219ENST00000600055 OR2T7P0C7T2 308 aa12.84□□□□□ -0.35
LIG1-219ENST00000600055 PMELP40967 661 aa12.84□□□□□ -0.35
LIG1-219ENST00000600055 MTNR1AP48039 350 aa12.84□□□□□ -0.35
LIG1-219ENST00000600055 SRP9P49458 86 aaKnown RBP12.84□□□□□ -0.35
LIG1-219ENST00000600055 EGR3Q06889 387 aa12.84□□□□□ -0.35
LIG1-219ENST00000600055 PRAMEF6Q5VXH4 476 aa12.84□□□□□ -0.35
LIG1-219ENST00000600055 MEDAGQ5VYS4 303 aa12.84□□□□□ -0.35
LIG1-219ENST00000600055 MOGAT3Q86VF5 341 aa12.84□□□□□ -0.35
LIG1-219ENST00000600055 OR2T27Q8NH04 317 aa12.84□□□□□ -0.35
LIG1-219ENST00000600055 MSI2Q96DH6 328 aaKnown RBP12.84□□□□□ -0.35
LIG1-219ENST00000600055 ADAT1Q9BUB4 502 aaKnown RBP12.84□□□□□ -0.35
LIG1-219ENST00000600055 PBOV1Q9GZY1 135 aa12.84□□□□□ -0.35
LIG1-219ENST00000600055 VCXQ9H320 206 aa12.84□□□□□ -0.35
LIG1-219ENST00000600055 MRPL15Q9P015 296 aaKnown RBP12.84□□□□□ -0.35
LIG1-219ENST00000600055 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.84□□□□□ -0.35
LIG1-219ENST00000600055 RPP14O95059 124 aaKnown RBP12.83□□□□□ -0.36
LIG1-219ENST00000600055 CLIC3O95833 236 aa12.83□□□□□ -0.36
LIG1-219ENST00000600055 CFL1P23528 166 aaKnown RBP12.83□□□□□ -0.36
LIG1-219ENST00000600055 ACKR3P25106 362 aa12.83□□□□□ -0.36
LIG1-219ENST00000600055 DCTDP32321 178 aa12.83□□□□□ -0.36
LIG1-219ENST00000600055 CD200P41217 278 aa12.83□□□□□ -0.36
LIG1-219ENST00000600055 GZMKP49863 264 aa12.83□□□□□ -0.36
LIG1-219ENST00000600055 MMP16P51512 607 aa12.83□□□□□ -0.36
LIG1-219ENST00000600055 LMO4P61968 165 aa12.83□□□□□ -0.36
LIG1-219ENST00000600055 ZNF85Q03923 595 aa12.83□□□□□ -0.36
LIG1-219ENST00000600055 ZNF829Q3KNS6 432 aaPredicted RBP12.83□□□□□ -0.36
LIG1-219ENST00000600055 C6orf52Q5T4I8 152 aa12.83□□□□□ -0.36
LIG1-219ENST00000600055 ZNF684Q5T5D7 378 aa12.83□□□□□ -0.36
LIG1-219ENST00000600055 OGFRL1Q5TC84 451 aaPredicted RBP12.83□□□□□ -0.36
LIG1-219ENST00000600055 ZNF555Q8NEP9 628 aa12.83□□□□□ -0.36
LIG1-219ENST00000600055 APH1BQ8WW43 257 aa12.83□□□□□ -0.36
LIG1-219ENST00000600055 CYGBQ8WWM9 190 aa12.83□□□□□ -0.36
LIG1-219ENST00000600055 RAB1CQ92928 201 aa12.83□□□□□ -0.36
LIG1-219ENST00000600055 TIMD4Q96H15 378 aa12.83□□□□□ -0.36
LIG1-219ENST00000600055 RDH12Q96NR8 316 aa12.83□□□□□ -0.36
LIG1-219ENST00000600055 SIGLEC11Q96RL6 698 aa12.83□□□□□ -0.36
LIG1-219ENST00000600055 VCX3BQ9H321 246 aa12.83□□□□□ -0.36
LIG1-219ENST00000600055 RGCCQ9H4X1 137 aa12.83□□□□□ -0.36
LIG1-219ENST00000600055 RNPEPL1Q9HAU8 725 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms