RNA–Protein interactions for RNA: ENST00000597325.1

SHKBP1-213, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 366 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-213ENST00000597325 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.41□□□□□ -0.746e-7■□□□□ 9
SHKBP1-213ENST00000597325 ABCA1O95477 2261 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 LOC100509620A0A075B734 347 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 TMEM212A6NML5 194 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 E9PI62 339 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 CCRL2O00421 344 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 SMPD2O60906 423 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 SRSF10O75494 262 aaKnown RBP10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 LALBAP00709 142 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 CRYAAP02489 173 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 LCATP04180 440 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 TFAP2AP05549 437 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 UBCP0CG48 685 aaKnown RBP10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 SLC2A1P11166 492 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 EPXP11678 715 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 CCL2P13500 99 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 CPEP16870 476 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 CCR9P51686 369 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 GP2P55259 537 aaKnown RBP10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 SLC3A1Q07837 685 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 WDR38Q5JTN6 314 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 LIPKQ5VXJ0 399 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 MYPOPQ86VE0 399 aaPredicted RBP10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 ZNF676Q8N7Q3 588 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 OR52H1Q8NGJ2 320 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 OR5AK2Q8NH90 309 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 WFIKKN1Q96NZ8 548 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 PBOV1Q9GZY1 135 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 NBEAL2Q6ZNJ1 2754 aa10.4□□□□□ -0.74
SHKBP1-213ENST00000597325 J3QW42 95 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 CASKO14936 926 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 OGG1O15527 345 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 GPRIN2O60269 458 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 GOSR1O95249 250 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 PNPP00491 289 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 THBDP07204 575 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 PSMA1P25786 263 aaKnown RBP10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 TTKP33981 857 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 KIR3DL2P43630 455 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 ALDH3B2P48448 385 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 NANOS3P60323 173 aaKnown RBP10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 NAAAQ02083 359 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 HGFACQ04756 655 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 MALLQ13021 153 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 GPR50Q13585 617 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 TPBGQ13641 420 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 BLMHQ13867 455 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 ODF4Q2M2E3 257 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 GFOD2Q3B7J2 385 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 DMKNQ6E0U4 476 aaPredicted RBP10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 ZNF704Q6ZNC4 412 aaPredicted RBP10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 PRSS35Q8N3Z0 413 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 OR8B12Q8NGG6 310 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 OR5L1Q8NGL2 311 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 LINC01560Q8TB33 94 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 ABHD4Q8TB40 342 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 APOBEC3DQ96AK3 386 aaPredicted RBP10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 DACH2Q96NX9 599 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 C19orf24Q9BVV8 132 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 ESRP2Q9H6T0 727 aaKnown RBP10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 G6PC2Q9NQR9 355 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 NDUFB11Q9NX14 153 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 NPAP1Q9NZP6 1156 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 FRRS1LQ9P0K9 344 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 SPEF1Q9Y4P9 236 aa10.39□□□□□ -0.75
SHKBP1-213ENST00000597325 IGHV2OR16-5A0A0B4J2B6 119 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 A0A1B0GVI7 797 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 OR4C45A6NMZ5 311 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 XRCC2O43543 280 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 PLPP2O43688 288 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 NOL3O60936 208 aaKnown RBP10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 SERPINA3P01011 423 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 CD1AP06126 327 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 CD36P16671 472 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 CFL1P23528 166 aaKnown RBP10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 PTAFRP25105 342 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 CD40P25942 277 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 GABRA5P31644 462 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 LIPAP38571 399 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 DOC2BQ14184 412 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 TRAM1Q15629 374 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 RSPO1Q2MKA7 263 aaPredicted RBP10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 TIMM50Q3ZCQ8 353 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 TMEM244Q5VVB8 128 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 SEZ6L2Q6UXD5 910 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 ELMOD2Q8IZ81 293 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 PAQR4Q8N4S7 273 aaPredicted RBP10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 OR13F1Q8NGS4 319 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 AKAP1Q92667 903 aaKnown RBP eCLIP10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 GHSRQ92847 366 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 PDCD1LG2Q9BQ51 273 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 TMED9Q9BVK6 235 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 C1QTNF5Q9BXJ0 243 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 OR51B6Q9H340 312 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 RGCCQ9H4X1 137 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 ZNF391Q9UJN7 358 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 SLC22A13Q9Y226 551 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 ZNF281Q9Y2X9 895 aa10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 SIRT4Q9Y6E7 314 aaPredicted RBP10.38□□□□□ -0.75
SHKBP1-213ENST00000597325 KMT2CQ8NEZ4 4911 aaKnown RBP10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms