RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 ZNF391Q9UJN7 358 aa12.74□□□□□ -0.37
UPF1-202ENST00000594243 IKZF2Q9UKS7 526 aa12.74□□□□□ -0.37
UPF1-202ENST00000594243 TMEM269A0A1B0GVZ9 245 aa12.73□□□□□ -0.37
UPF1-202ENST00000594243 CD5LO43866 347 aa12.73□□□□□ -0.37
UPF1-202ENST00000594243 GMDSO60547 372 aa12.73□□□□□ -0.37
UPF1-202ENST00000594243 LILRA1O75019 489 aa12.73□□□□□ -0.37
UPF1-202ENST00000594243 ENTPD6O75354 484 aa12.73□□□□□ -0.37
UPF1-202ENST00000594243 MTNR1AP48039 350 aa12.73□□□□□ -0.37
UPF1-202ENST00000594243 GZMKP49863 264 aa12.73□□□□□ -0.37
UPF1-202ENST00000594243 PRSS12P56730 875 aa12.73□□□□□ -0.37
UPF1-202ENST00000594243 ELF3P78545 371 aaPredicted RBP12.73□□□□□ -0.37
UPF1-202ENST00000594243 FAM3AP98173 230 aa12.73□□□□□ -0.37
UPF1-202ENST00000594243 SNCBQ16143 134 aa12.73□□□□□ -0.37
UPF1-202ENST00000594243 ZNF829Q3KNS6 432 aaPredicted RBP12.73□□□□□ -0.37
UPF1-202ENST00000594243 LPCAT4Q643R3 524 aa12.73□□□□□ -0.37
UPF1-202ENST00000594243 CYB5R2Q6BCY4 276 aa12.73□□□□□ -0.37
UPF1-202ENST00000594243 Q71RC1 249 aaPredicted RBP12.73□□□□□ -0.37
UPF1-202ENST00000594243 ITLN1Q8WWA0 313 aa12.73□□□□□ -0.37
UPF1-202ENST00000594243 HPS1Q92902 700 aa12.73□□□□□ -0.37
UPF1-202ENST00000594243 TREM2Q9NZC2 230 aa12.73□□□□□ -0.37
UPF1-202ENST00000594243 MRPL15Q9P015 296 aaKnown RBP12.73□□□□□ -0.37
UPF1-202ENST00000594243 ZNF319Q9P2F9 582 aa12.73□□□□□ -0.37
UPF1-202ENST00000594243 PPP1R3CQ9UQK1 317 aa12.73□□□□□ -0.37
UPF1-202ENST00000594243 FLNAP21333 2647 aaKnown RBP12.73□□□□□ -0.37
UPF1-202ENST00000594243 ANKRD30BLA7E2S9 258 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 H0YL77 283 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 IFNL4K9M1U5 179 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 MLNRO43193 412 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 HLA-DPB1P04440 258 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 CA6P23280 308 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 ANOS1P23352 680 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 MMP16P51512 607 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 MZT1Q08AG7 82 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 OR8G1Q15617 311 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 GFOD2Q3B7J2 385 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 SPRNQ5BIV9 151 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 KLBQ86Z14 1044 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 ENTHD1Q8IYW4 607 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 FTMTQ8N4E7 242 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 CELF2-AS1Q8N7Q2 184 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 SPERTQ8NA61 448 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 OR10AD1Q8NGE0 317 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 RHOXF1Q8NHV9 184 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 ITFG2Q969R8 447 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 MEGF10Q96KG7 1140 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 APOL4Q9BPW4 351 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 TTTY10Q9BZA0 68 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 PCDHGB1Q9Y5G3 927 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 CACNG2Q9Y698 323 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 NAV3Q8IVL0 2385 aa12.72□□□□□ -0.37
UPF1-202ENST00000594243 hCG_38984A0A1B0GV85 526 aa12.71□□□□□ -0.37
UPF1-202ENST00000594243 A0A1W2PQL4 384 aaPredicted RBP12.71□□□□□ -0.37
UPF1-202ENST00000594243 LRP5LA4QPB2 252 aa12.71□□□□□ -0.37
UPF1-202ENST00000594243 F5H5P2 479 aa12.71□□□□□ -0.37
UPF1-202ENST00000594243 CASQ2O14958 399 aaPredicted RBP12.71□□□□□ -0.37
UPF1-202ENST00000594243 KRT8P05787 483 aa12.71□□□□□ -0.37
UPF1-202ENST00000594243 IGHV4-31P0DP07 118 aa12.71□□□□□ -0.37
UPF1-202ENST00000594243 GABRB1P18505 474 aa12.71□□□□□ -0.37
UPF1-202ENST00000594243 GSK3AP49840 483 aa12.71□□□□□ -0.37
UPF1-202ENST00000594243 MVKQ03426 396 aa12.71□□□□□ -0.37
UPF1-202ENST00000594243 TTC23Q5W5X9 447 aa12.71□□□□□ -0.37
UPF1-202ENST00000594243 CSNK2A3Q8NEV1 391 aa12.71□□□□□ -0.37
UPF1-202ENST00000594243 OR10H4Q8NGA5 316 aa12.71□□□□□ -0.37
UPF1-202ENST00000594243 OR56B2PQ8NGI1 322 aa12.71□□□□□ -0.37
UPF1-202ENST00000594243 ERGIC1Q969X5 290 aa12.71□□□□□ -0.37
UPF1-202ENST00000594243 RNFT2Q96EX2 444 aa12.71□□□□□ -0.37
UPF1-202ENST00000594243 TBX5Q99593 518 aa12.71□□□□□ -0.37
UPF1-202ENST00000594243 PBOV1Q9GZY1 135 aa12.71□□□□□ -0.37
UPF1-202ENST00000594243 GCM1Q9NP62 436 aa12.71□□□□□ -0.37
UPF1-202ENST00000594243 TMEM106BQ9NUM4 274 aa12.71□□□□□ -0.37
UPF1-202ENST00000594243 FAM206AQ9NX38 181 aa12.71□□□□□ -0.37
UPF1-202ENST00000594243 WIPI2Q9Y4P8 454 aa12.71□□□□□ -0.37
UPF1-202ENST00000594243 RTTNQ86VV8 2226 aa12.71□□□□□ -0.37
UPF1-202ENST00000594243 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.7□□□□□ -0.38
UPF1-202ENST00000594243 A0A0U1RQV5 110 aa12.7□□□□□ -0.38
UPF1-202ENST00000594243 PRR32B1ATL7 298 aa12.7□□□□□ -0.38
UPF1-202ENST00000594243 DLGAP1O14490 977 aa12.7□□□□□ -0.38
UPF1-202ENST00000594243 SULT1C4O75897 302 aa12.7□□□□□ -0.38
UPF1-202ENST00000594243 APOL3O95236 402 aa12.7□□□□□ -0.38
UPF1-202ENST00000594243 PEX2P28328 305 aa12.7□□□□□ -0.38
UPF1-202ENST00000594243 CD200P41217 278 aa12.7□□□□□ -0.38
UPF1-202ENST00000594243 ACTC1P68032 377 aa12.7□□□□□ -0.38
UPF1-202ENST00000594243 ACTA1P68133 377 aa12.7□□□□□ -0.38
UPF1-202ENST00000594243 KRTAP1-1Q07627 177 aa12.7□□□□□ -0.38
UPF1-202ENST00000594243 MAB21L1Q13394 359 aa12.7□□□□□ -0.38
UPF1-202ENST00000594243 OGFRL1Q5TC84 451 aaPredicted RBP12.7□□□□□ -0.38
UPF1-202ENST00000594243 PLEKHG7Q6ZR37 379 aa12.7□□□□□ -0.38
UPF1-202ENST00000594243 RFLNBQ8N5W9 214 aa12.7□□□□□ -0.38
UPF1-202ENST00000594243 YIPF7Q8N8F6 280 aa12.7□□□□□ -0.38
UPF1-202ENST00000594243 PLPP7Q8NBV4 271 aa12.7□□□□□ -0.38
UPF1-202ENST00000594243 OR8B12Q8NGG6 310 aa12.7□□□□□ -0.38
UPF1-202ENST00000594243 CLDND2Q8NHS1 167 aa12.7□□□□□ -0.38
UPF1-202ENST00000594243 MYCBPQ99417 103 aaPredicted RBP12.7□□□□□ -0.38
UPF1-202ENST00000594243 ADAT1Q9BUB4 502 aaKnown RBP12.7□□□□□ -0.38
UPF1-202ENST00000594243 VCXQ9H320 206 aa12.7□□□□□ -0.38
UPF1-202ENST00000594243 MOB1AQ9H8S9 216 aa12.7□□□□□ -0.38
UPF1-202ENST00000594243 EXOGQ9Y2C4 368 aaKnown RBP12.7□□□□□ -0.38
UPF1-202ENST00000594243 SNX5Q9Y5X3 404 aa12.7□□□□□ -0.38
UPF1-202ENST00000594243 NPTNQ9Y639 398 aa12.7□□□□□ -0.38
UPF1-202ENST00000594243 R4GMQ9 66 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms