RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 ACOT11Q8WXI4 607 aaPredicted RBP10.39□□□□□ -0.75
SS18-219ENST00000581570 PITX2Q99697 317 aa10.39□□□□□ -0.75
SS18-219ENST00000581570 DCTN5Q9BTE1 182 aa10.39□□□□□ -0.75
SS18-219ENST00000581570 NDEL1Q9GZM8 345 aa10.39□□□□□ -0.75
SS18-219ENST00000581570 NPFFR1Q9GZQ6 430 aa10.39□□□□□ -0.75
SS18-219ENST00000581570 VSX1Q9NZR4 365 aaPredicted RBP10.39□□□□□ -0.75
SS18-219ENST00000581570 RHCGQ9UBD6 479 aa10.39□□□□□ -0.75
SS18-219ENST00000581570 NOTCH3Q9UM47 2321 aa10.39□□□□□ -0.75
SS18-219ENST00000581570 GGT3PA6NGU5 568 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 NDUFB3O43676 98 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 MUC1P15941 1255 aaPredicted RBP10.38□□□□□ -0.75
SS18-219ENST00000581570 SDHAP31040 664 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 MDH1P40925 334 aaKnown RBP10.38□□□□□ -0.75
SS18-219ENST00000581570 GPR4P46093 362 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 MZT1Q08AG7 82 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 TRAP1Q12931 704 aaKnown RBP10.38□□□□□ -0.75
SS18-219ENST00000581570 ECH1Q13011 328 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 TRAM2Q15035 370 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 CYBRD1Q53TN4 286 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 WDR38Q5JTN6 314 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 NCR3LG1Q68D85 454 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 GPR139Q6DWJ6 353 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 CRIP3Q6Q6R5 217 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 ZNF730Q6ZMV8 503 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 RNF113BQ8IZP6 322 aaKnown RBP10.38□□□□□ -0.75
SS18-219ENST00000581570 FAM216BQ8N7L0 139 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 WFDC9Q8NEX5 89 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 C17orf50Q8WW18 174 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 LZICQ8WZA0 190 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 RORBQ92753 470 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 TPD52L3Q96J77 140 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 C7orf26Q96N11 449 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 ATF6BQ99941 703 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 CITED2Q99967 270 aaPredicted RBP10.38□□□□□ -0.75
SS18-219ENST00000581570 FNDC11Q9BVV2 318 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 PRPF19Q9UMS4 504 aaKnown RBP10.38□□□□□ -0.75
SS18-219ENST00000581570 DNAH9Q9NYC9 4486 aa10.38□□□□□ -0.75
SS18-219ENST00000581570 A0A087WUU8 490 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.37□□□□□ -0.75
SS18-219ENST00000581570 ADARB2-AS1A8MUL3 147 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 SOCS2O14508 198 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 PPP1R3DO95685 299 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 CDKN2AP42771 156 aaKnown RBP10.37□□□□□ -0.75
SS18-219ENST00000581570 TPTEP56180 551 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 MAGOHP61326 146 aaKnown RBP10.37□□□□□ -0.75
SS18-219ENST00000581570 CD69Q07108 199 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 IKZF1Q13422 519 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 PCK2Q16822 640 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 LRRC75BQ2VPJ9 315 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 LRRC10Q5BKY1 277 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 NANOGP8Q6NSW7 305 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 PGBD2Q6P3X8 592 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 DNM1P34Q6PK57 102 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 TBPL2Q6SJ96 375 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 CFAP77Q6ZQR2 320 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 PTCHD4Q6ZW05 846 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 TMPRSS11FQ6ZWK6 438 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 TSEN54Q7Z6J9 526 aaKnown RBP10.37□□□□□ -0.75
SS18-219ENST00000581570 ADCK1Q86TW2 530 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 LINC00346Q8IVM7 164 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 OFCC1Q8IZS5 231 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 C8orf46Q8TAG6 207 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 LRRC29Q8WV35 223 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 H1FXQ92522 213 aaKnown RBP10.37□□□□□ -0.75
SS18-219ENST00000581570 TSSK2Q96PF2 358 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 NKX3-1Q99801 234 aaPredicted RBP10.37□□□□□ -0.75
SS18-219ENST00000581570 OCSTAMPQ9BR26 566 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 MEGF9Q9H1U4 602 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 RNPEPL1Q9HAU8 725 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 NRIP3Q9NQ35 241 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 C14orf119Q9NWQ9 140 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 ADA2Q9NZK5 511 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 MRPL15Q9P015 296 aaKnown RBP10.37□□□□□ -0.75
SS18-219ENST00000581570 SF3B6Q9Y3B4 125 aaKnown RBP10.37□□□□□ -0.75
SS18-219ENST00000581570 IER3IP1Q9Y5U9 82 aa10.37□□□□□ -0.75
SS18-219ENST00000581570 J3KTA2 159 aa10.36□□□□□ -0.75
SS18-219ENST00000581570 M0R1W7 72 aa10.36□□□□□ -0.75
SS18-219ENST00000581570 DCTN6O00399 190 aa10.36□□□□□ -0.75
SS18-219ENST00000581570 BHLHE40O14503 412 aa10.36□□□□□ -0.75
SS18-219ENST00000581570 ACOT8O14734 319 aa10.36□□□□□ -0.75
SS18-219ENST00000581570 NDUFB2O95178 105 aa10.36□□□□□ -0.75
SS18-219ENST00000581570 CRABP1P29762 137 aa10.36□□□□□ -0.75
SS18-219ENST00000581570 KDELR2P33947 212 aa10.36□□□□□ -0.75
SS18-219ENST00000581570 GRK5P34947 590 aa10.36□□□□□ -0.75
SS18-219ENST00000581570 TGM4P49221 684 aa10.36□□□□□ -0.75
SS18-219ENST00000581570 ZNF92Q03936 586 aa10.36□□□□□ -0.75
SS18-219ENST00000581570 CYLC2Q14093 348 aaPredicted RBP10.36□□□□□ -0.75
SS18-219ENST00000581570 LRRC23Q53EV4 343 aaPredicted RBP10.36□□□□□ -0.75
SS18-219ENST00000581570 RABL3Q5HYI8 236 aa10.36□□□□□ -0.75
SS18-219ENST00000581570 SLC18B1Q6NT16 456 aa10.36□□□□□ -0.75
SS18-219ENST00000581570 MBOAT2Q6ZWT7 520 aa10.36□□□□□ -0.75
SS18-219ENST00000581570 RRM2BQ7LG56 351 aa10.36□□□□□ -0.75
SS18-219ENST00000581570 C11orf53Q8IXP5 236 aa10.36□□□□□ -0.75
SS18-219ENST00000581570 OR2AJ1Q8NGZ0 328 aa10.36□□□□□ -0.75
SS18-219ENST00000581570 OR2AE1Q8NHA4 323 aa10.36□□□□□ -0.75
SS18-219ENST00000581570 TSPEARQ8WU66 669 aa10.36□□□□□ -0.75
SS18-219ENST00000581570 SH3GL1Q99961 368 aa10.36□□□□□ -0.75
SS18-219ENST00000581570 METTL8Q9H825 291 aaKnown RBP10.36□□□□□ -0.75
SS18-219ENST00000581570 SRA1Q9HD15 236 aaKnown RBP10.36□□□□□ -0.75
SS18-219ENST00000581570 SERTAD4Q9NUC0 356 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms