RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 WFDC8Q8IUA0 241 aa21.68■■□□□ 1.06
SHMT1-207ENST00000580002 OR52H1Q8NGJ2 320 aa21.68■■□□□ 1.06
SHMT1-207ENST00000580002 OR14K1Q8NGZ2 314 aa21.68■■□□□ 1.06
SHMT1-207ENST00000580002 ITLN2Q8WWU7 325 aaPredicted RBP21.68■■□□□ 1.06
SHMT1-207ENST00000580002 SNTG1Q9NSN8 517 aa21.68■■□□□ 1.06
SHMT1-207ENST00000580002 PTTG3PQ9NZH4 202 aa21.68■■□□□ 1.06
SHMT1-207ENST00000580002 GSTK1Q9Y2Q3 226 aa21.68■■□□□ 1.06
SHMT1-207ENST00000580002 A0A1B0GVI7 797 aa21.67■■□□□ 1.06
SHMT1-207ENST00000580002 ZNF35P13682 527 aa21.67■■□□□ 1.06
SHMT1-207ENST00000580002 CCL1P22362 96 aa21.67■■□□□ 1.06
SHMT1-207ENST00000580002 DYNC2LI1Q8TCX1 351 aa21.67■■□□□ 1.06
SHMT1-207ENST00000580002 SLC30A2Q9BRI3 323 aa21.67■■□□□ 1.06
SHMT1-207ENST00000580002 PPP1R3EQ9H7J1 279 aa21.67■■□□□ 1.06
SHMT1-207ENST00000580002 CDH20Q9HBT6 801 aa21.67■■□□□ 1.06
SHMT1-207ENST00000580002 GATBO75879 557 aaKnown RBP21.66■■□□□ 1.06
SHMT1-207ENST00000580002 ACKR3P25106 362 aa21.66■■□□□ 1.06
SHMT1-207ENST00000580002 FBXL19-AS1Q494R0 122 aa21.66■■□□□ 1.06
SHMT1-207ENST00000580002 USP43Q70EL4 1123 aa21.66■■□□□ 1.06
SHMT1-207ENST00000580002 PLPP7Q8NBV4 271 aa21.66■■□□□ 1.06
SHMT1-207ENST00000580002 LINC01560Q8TB33 94 aa21.66■■□□□ 1.06
SHMT1-207ENST00000580002 RNASE6Q93091 150 aaKnown RBP21.66■■□□□ 1.06
SHMT1-207ENST00000580002 NKX3-1Q99801 234 aaPredicted RBP21.66■■□□□ 1.06
SHMT1-207ENST00000580002 ZNF275Q9NSD4 429 aaPredicted RBP21.66■■□□□ 1.06
SHMT1-207ENST00000580002 CRIM1Q9NZV1 1036 aa21.66■■□□□ 1.06
SHMT1-207ENST00000580002 IGHV2OR16-5A0A0B4J2B6 119 aa21.66■■□□□ 1.06
SHMT1-207ENST00000580002 OR10A3P58181 314 aa21.66■■□□□ 1.06
SHMT1-207ENST00000580002 TFF3Q07654 80 aa21.66■■□□□ 1.06
SHMT1-207ENST00000580002 SPOCK1Q08629 439 aa21.66■■□□□ 1.06
SHMT1-207ENST00000580002 HSD17B12Q53GQ0 312 aa21.66■■□□□ 1.06
SHMT1-207ENST00000580002 GFI1Q99684 422 aa21.66■■□□□ 1.06
SHMT1-207ENST00000580002 BARHL1Q9BZE3 327 aa21.66■■□□□ 1.06
SHMT1-207ENST00000580002 KCNJ16Q9NPI9 418 aa21.66■■□□□ 1.06
SHMT1-207ENST00000580002 PMF1-BGLAPU3KQ54 211 aa21.66■■□□□ 1.06
SHMT1-207ENST00000580002 SPTBN1Q01082 2364 aaKnown RBP21.65■■□□□ 1.06
SHMT1-207ENST00000580002 SMPD2O60906 423 aa21.65■■□□□ 1.06
SHMT1-207ENST00000580002 SRMP19623 302 aa21.65■■□□□ 1.06
SHMT1-207ENST00000580002 GK2Q14410 553 aaPredicted RBP21.65■■□□□ 1.06
SHMT1-207ENST00000580002 APOBEC3DQ96AK3 386 aaPredicted RBP21.65■■□□□ 1.06
SHMT1-207ENST00000580002 TAS2R4Q9NYW5 299 aa21.65■■□□□ 1.06
SHMT1-207ENST00000580002 FLNCQ14315 2725 aa21.64■■□□□ 1.06
SHMT1-207ENST00000580002 FAM3AP98173 230 aa21.64■■□□□ 1.06
SHMT1-207ENST00000580002 NAAAQ02083 359 aa21.64■■□□□ 1.06
SHMT1-207ENST00000580002 DOK3Q7L591 496 aa21.64■■□□□ 1.06
SHMT1-207ENST00000580002 FAM169BQ8N8A8 192 aa21.64■■□□□ 1.06
SHMT1-207ENST00000580002 OR51A2Q8NGJ7 313 aa21.64■■□□□ 1.06
SHMT1-207ENST00000580002 V9GYS6 101 aa21.64■■□□□ 1.06
SHMT1-207ENST00000580002 FAHP16930 419 aa21.64■■□□□ 1.05
SHMT1-207ENST00000580002 ADRA2CP18825 462 aa21.64■■□□□ 1.05
SHMT1-207ENST00000580002 CEP78Q5JTW2 689 aa21.64■■□□□ 1.05
SHMT1-207ENST00000580002 AK6Q9Y3D8 172 aaKnown RBP21.64■■□□□ 1.05
SHMT1-207ENST00000580002 HEATR1Q9H583 2144 aaKnown RBP21.63■■□□□ 1.05
SHMT1-207ENST00000580002 hCG_38984A0A1B0GV85 526 aa21.63■■□□□ 1.05
SHMT1-207ENST00000580002 CASKO14936 926 aa21.63■■□□□ 1.05
SHMT1-207ENST00000580002 RNF224P0DH78 156 aa21.63■■□□□ 1.05
SHMT1-207ENST00000580002 GSK3AP49840 483 aa21.63■■□□□ 1.05
SHMT1-207ENST00000580002 UCP2P55851 309 aa21.63■■□□□ 1.05
SHMT1-207ENST00000580002 RNF144BQ7Z419 303 aa21.63■■□□□ 1.05
SHMT1-207ENST00000580002 DNAAF1Q8NEP3 725 aa21.63■■□□□ 1.05
SHMT1-207ENST00000580002 KBTBD8Q8NFY9 601 aa21.63■■□□□ 1.05
SHMT1-207ENST00000580002 SPSB4Q96A44 273 aa21.63■■□□□ 1.05
SHMT1-207ENST00000580002 MED18Q9BUE0 208 aa21.63■■□□□ 1.05
SHMT1-207ENST00000580002 TBCCD1Q9NVR7 557 aa21.63■■□□□ 1.05
SHMT1-207ENST00000580002 DPRXA6NFQ7 191 aa21.62■■□□□ 1.05
SHMT1-207ENST00000580002 DHRS3O75911 302 aa21.62■■□□□ 1.05
SHMT1-207ENST00000580002 MAS1P04201 325 aa21.62■■□□□ 1.05
SHMT1-207ENST00000580002 TMEM255AQ5JRV8 349 aa21.62■■□□□ 1.05
SHMT1-207ENST00000580002 MTFR2Q6P444 385 aa21.62■■□□□ 1.05
SHMT1-207ENST00000580002 LRRTM1Q86UE6 522 aa21.62■■□□□ 1.05
SHMT1-207ENST00000580002 OR2J1Q9GZK6 312 aa21.62■■□□□ 1.05
SHMT1-207ENST00000580002 PIGLQ9Y2B2 252 aa21.62■■□□□ 1.05
SHMT1-207ENST00000580002 PAMR1Q6UXH9 720 aa21.61■■□□□ 1.05
SHMT1-207ENST00000580002 Q6ZSR3 168 aa21.61■■□□□ 1.05
SHMT1-207ENST00000580002 REPIN1Q9BWE0 567 aaKnown RBP21.61■■□□□ 1.05
SHMT1-207ENST00000580002 SP140LQ9H930 580 aa21.61■■□□□ 1.05
SHMT1-207ENST00000580002 NPDC1Q9NQX5 325 aaPredicted RBP21.61■■□□□ 1.05
SHMT1-207ENST00000580002 EIF3KQ9UBQ5 218 aaKnown RBP21.61■■□□□ 1.05
SHMT1-207ENST00000580002 A0A0G2JK05 382 aa21.61■■□□□ 1.05
SHMT1-207ENST00000580002 XRCC2O43543 280 aa21.61■■□□□ 1.05
SHMT1-207ENST00000580002 ARL6IP5O75915 188 aa21.61■■□□□ 1.05
SHMT1-207ENST00000580002 IGFBP3P17936 291 aaPredicted RBP21.61■■□□□ 1.05
SHMT1-207ENST00000580002 GNALP38405 381 aa21.61■■□□□ 1.05
SHMT1-207ENST00000580002 MTNR1BP49286 362 aa21.61■■□□□ 1.05
SHMT1-207ENST00000580002 PPP1CBP62140 327 aa21.61■■□□□ 1.05
SHMT1-207ENST00000580002 MSMPQ1L6U9 139 aa21.61■■□□□ 1.05
SHMT1-207ENST00000580002 OR1J1Q8NGS3 322 aa21.61■■□□□ 1.05
SHMT1-207ENST00000580002 SLC25A40Q8TBP6 338 aa21.61■■□□□ 1.05
SHMT1-207ENST00000580002 OR10A4Q9H209 315 aa21.61■■□□□ 1.05
SHMT1-207ENST00000580002 FZR1Q9UM11 496 aa21.61■■□□□ 1.05
SHMT1-207ENST00000580002 FAM208BQ5VWN6 2430 aa21.6■■□□□ 1.05
SHMT1-207ENST00000580002 TRAV1-2A0A0B4J238 106 aa21.6■■□□□ 1.05
SHMT1-207ENST00000580002 LILRA1O75019 489 aa21.6■■□□□ 1.05
SHMT1-207ENST00000580002 IL1AP01583 271 aa21.6■■□□□ 1.05
SHMT1-207ENST00000580002 MYL9P24844 172 aa21.6■■□□□ 1.05
SHMT1-207ENST00000580002 CD40P25942 277 aa21.6■■□□□ 1.05
SHMT1-207ENST00000580002 MAPK3P27361 379 aaPredicted RBP21.6■■□□□ 1.05
SHMT1-207ENST00000580002 HNRNPA0Q13151 305 aaKnown RBP21.6■■□□□ 1.05
SHMT1-207ENST00000580002 ALKBH6Q3KRA9 238 aa21.6■■□□□ 1.05
SHMT1-207ENST00000580002 PARP16Q8N5Y8 322 aa21.6■■□□□ 1.05
SHMT1-207ENST00000580002 ATP6V1G2-DDX39BF2Z307 99 aa21.59■■□□□ 1.05
SHMT1-207ENST00000580002 ICMTO60725 284 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms