RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 RSL24D1Q9UHA3 163 aaKnown RBP13.92□□□□□ -0.18
SS18-211ENST00000578954 STARD10Q9Y365 291 aa13.92□□□□□ -0.18
SS18-211ENST00000578954 N6AMT1Q9Y5N5 214 aa13.92□□□□□ -0.18
SS18-211ENST00000578954 V9GYS6 101 aa13.92□□□□□ -0.18
SS18-211ENST00000578954 CADP27708 2225 aa13.92□□□□□ -0.18
SS18-211ENST00000578954 MYO18BQ8IUG5 2567 aa13.91□□□□□ -0.18
SS18-211ENST00000578954 DPRXA6NFQ7 191 aa13.91□□□□□ -0.18
SS18-211ENST00000578954 TUBAL3A6NHL2 446 aa13.91□□□□□ -0.18
SS18-211ENST00000578954 TRIM64BA6NI03 449 aa13.91□□□□□ -0.18
SS18-211ENST00000578954 PIN1P1O15428 100 aa13.91□□□□□ -0.18
SS18-211ENST00000578954 DHRS3O75911 302 aa13.91□□□□□ -0.18
SS18-211ENST00000578954 CRYAAP02489 173 aa13.91□□□□□ -0.18
SS18-211ENST00000578954 RAF1P04049 648 aa13.91□□□□□ -0.18
SS18-211ENST00000578954 OCM2P0CE71 109 aa13.91□□□□□ -0.18
SS18-211ENST00000578954 PLA2G2AP14555 144 aa13.91□□□□□ -0.18
SS18-211ENST00000578954 MAPK3P27361 379 aaPredicted RBP13.91□□□□□ -0.18
SS18-211ENST00000578954 NKX6-1P78426 367 aaPredicted RBP13.91□□□□□ -0.18
SS18-211ENST00000578954 ZNF92Q03936 586 aa13.91□□□□□ -0.18
SS18-211ENST00000578954 OR8B8Q15620 311 aa13.91□□□□□ -0.18
SS18-211ENST00000578954 FBXW12Q6X9E4 464 aa13.91□□□□□ -0.18
SS18-211ENST00000578954 KRT74Q7RTS7 529 aa13.91□□□□□ -0.18
SS18-211ENST00000578954 OR14K1Q8NGZ2 314 aa13.91□□□□□ -0.18
SS18-211ENST00000578954 OR2AE1Q8NHA4 323 aa13.91□□□□□ -0.18
SS18-211ENST00000578954 LINC01560Q8TB33 94 aa13.91□□□□□ -0.18
SS18-211ENST00000578954 C10orf35Q96D05 121 aa13.91□□□□□ -0.18
SS18-211ENST00000578954 DGCR14Q96DF8 476 aaKnown RBP13.91□□□□□ -0.18
SS18-211ENST00000578954 ZC3HAV1LQ96H79 300 aaKnown RBP13.91□□□□□ -0.18
SS18-211ENST00000578954 OR14A2Q96R54 314 aa13.91□□□□□ -0.18
SS18-211ENST00000578954 CENPOQ9BU64 300 aa13.91□□□□□ -0.18
SS18-211ENST00000578954 REPIN1Q9BWE0 567 aaKnown RBP13.91□□□□□ -0.18
SS18-211ENST00000578954 EXOSC4Q9NPD3 245 aaKnown RBP13.91□□□□□ -0.18
SS18-211ENST00000578954 ZNF275Q9NSD4 429 aaPredicted RBP13.91□□□□□ -0.18
SS18-211ENST00000578954 USP9XQ93008 2570 aaPredicted RBP13.91□□□□□ -0.18
SS18-211ENST00000578954 UBR5O95071 2799 aaPredicted RBP13.91□□□□□ -0.18
SS18-211ENST00000578954 LOC100506127A0A0U1RQW1 187 aa13.9□□□□□ -0.18
SS18-211ENST00000578954 H3BMQ9 156 aa13.9□□□□□ -0.18
SS18-211ENST00000578954 MTRF1O75570 445 aaKnown RBP13.9□□□□□ -0.18
SS18-211ENST00000578954 ATE1O95260 518 aa13.9□□□□□ -0.18
SS18-211ENST00000578954 RNF224P0DH78 156 aa13.9□□□□□ -0.18
SS18-211ENST00000578954 NR4A1P22736 598 aa13.9□□□□□ -0.18
SS18-211ENST00000578954 RAD52P43351 418 aa13.9□□□□□ -0.18
SS18-211ENST00000578954 PPP1CBP62140 327 aa13.9□□□□□ -0.18
SS18-211ENST00000578954 FAM3AP98173 230 aa13.9□□□□□ -0.18
SS18-211ENST00000578954 MALLQ13021 153 aa13.9□□□□□ -0.18
SS18-211ENST00000578954 TNK1Q13470 666 aa13.9□□□□□ -0.18
SS18-211ENST00000578954 GK2Q14410 553 aaPredicted RBP13.9□□□□□ -0.18
SS18-211ENST00000578954 NCMAPQ5T1S8 102 aa13.9□□□□□ -0.18
SS18-211ENST00000578954 CEACAM19Q7Z692 300 aa13.9□□□□□ -0.18
SS18-211ENST00000578954 TSEN15Q8WW01 171 aaKnown RBP13.9□□□□□ -0.18
SS18-211ENST00000578954 C12orf43Q96C57 262 aaKnown RBP13.9□□□□□ -0.18
SS18-211ENST00000578954 POFUT1Q9H488 388 aa13.9□□□□□ -0.18
SS18-211ENST00000578954 DHDHQ9UQ10 334 aa13.9□□□□□ -0.18
SS18-211ENST00000578954 GSTK1Q9Y2Q3 226 aa13.9□□□□□ -0.18
SS18-211ENST00000578954 KLF2Q9Y5W3 355 aaPredicted RBP13.9□□□□□ -0.18
SS18-211ENST00000578954 PYCARD-AS1I3L0S3 204 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 SLC22A1O15245 554 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 NOL3O60936 208 aaKnown RBP13.89□□□□□ -0.19
SS18-211ENST00000578954 ARL6IP5O75915 188 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 CD2P06729 351 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 FAM157BP0CG42 384 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 FSTP19883 344 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 GLRXP35754 106 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 MAGEB1P43366 347 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 NCS1P62166 190 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 GFOD2Q3B7J2 385 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 BEX5Q5H9J7 111 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 ZBTB37Q5TC79 503 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 C22orf42Q6IC83 251 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 ASPHD2Q6ICH7 369 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 ALKBH2Q6NS38 261 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 COMMD2Q86X83 199 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 PARP16Q8N5Y8 322 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 NUP37Q8NFH4 326 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 OR13C3Q8NGS6 347 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 TMEM106AQ96A25 262 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 MARS2Q96GW9 593 aaKnown RBP13.89□□□□□ -0.19
SS18-211ENST00000578954 FAM71F1Q96KD3 344 aaPredicted RBP13.89□□□□□ -0.19
SS18-211ENST00000578954 KCTD7Q96MP8 289 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 PPIL3Q9H2H8 161 aaKnown RBP13.89□□□□□ -0.19
SS18-211ENST00000578954 HEATR1Q9H583 2144 aaKnown RBP13.89□□□□□ -0.19
SS18-211ENST00000578954 ESRP2Q9H6T0 727 aaKnown RBP13.89□□□□□ -0.19
SS18-211ENST00000578954 NOX4Q9NPH5 578 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 PTTG3PQ9NZH4 202 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 SPEF1Q9Y4P9 236 aa13.89□□□□□ -0.19
SS18-211ENST00000578954 TRAV1-2A0A0B4J238 106 aa13.88□□□□□ -0.19
SS18-211ENST00000578954 ATP6V1G2-DDX39BF2Z307 99 aa13.88□□□□□ -0.19
SS18-211ENST00000578954 C19orf84I3L1E1 186 aa13.88□□□□□ -0.19
SS18-211ENST00000578954 ACKR3P25106 362 aa13.88□□□□□ -0.19
SS18-211ENST00000578954 LOXP28300 417 aaPredicted RBP13.88□□□□□ -0.19
SS18-211ENST00000578954 MAP2K3P46734 347 aa13.88□□□□□ -0.19
SS18-211ENST00000578954 SOX2P48431 317 aa13.88□□□□□ -0.19
SS18-211ENST00000578954 GSK3AP49840 483 aa13.88□□□□□ -0.19
SS18-211ENST00000578954 VBP1P61758 197 aa13.88□□□□□ -0.19
SS18-211ENST00000578954 BSPH1Q075Z2 132 aa13.88□□□□□ -0.19
SS18-211ENST00000578954 SPOCK1Q08629 439 aa13.88□□□□□ -0.19
SS18-211ENST00000578954 SNTB1Q13884 538 aaKnown RBP13.88□□□□□ -0.19
SS18-211ENST00000578954 FAM27D1Q5T7N8 215 aa13.88□□□□□ -0.19
SS18-211ENST00000578954 MRPL21Q7Z2W9 205 aaKnown RBP13.88□□□□□ -0.19
SS18-211ENST00000578954 DMRTC2Q8IXT2 367 aaPredicted RBP13.88□□□□□ -0.19
SS18-211ENST00000578954 OR1J1Q8NGS3 322 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms