RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 ACTA2P62736 377 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 ACTG2P63267 376 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 ACTC1P68032 377 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 ACTA1P68133 377 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 SLC7A9P82251 487 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 CYCSP99999 105 aaKnown RBP4.59□□□□□ -1.67
VPS53-219ENST00000576019 ORC2Q13416 577 aaPredicted RBP4.59□□□□□ -1.67
VPS53-219ENST00000576019 SLC10A1Q14973 349 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 TRAM2Q15035 370 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 ZNF146Q15072 292 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 TNXAQ16473 311 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 REG3GQ6UW15 175 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 SLC26A11Q86WA9 606 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 TMEM25Q86YD3 366 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 SYS1Q8N2H4 156 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 C17orf78Q8N4C9 275 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 ZNF565Q8N9K5 539 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 NUP37Q8NFH4 326 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 ACOT11Q8WXI4 607 aaPredicted RBP4.59□□□□□ -1.67
VPS53-219ENST00000576019 TNFRSF14Q92956 283 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 C9orf85Q96MD7 179 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 MED10Q9BTT4 135 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 NUDT9Q9BW91 350 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 ACTR6Q9GZN1 396 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 HDHD2Q9H0R4 259 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 RNF167Q9H6Y7 350 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 CCDC59Q9P031 241 aaKnown RBP4.59□□□□□ -1.67
VPS53-219ENST00000576019 SCML1Q9UN30 329 aa4.59□□□□□ -1.67
VPS53-219ENST00000576019 RCL1Q9Y2P8 373 aaKnown RBP4.59□□□□□ -1.67
VPS53-219ENST00000576019 MDC1Q14676 2089 aaKnown RBP4.58□□□□□ -1.68
VPS53-219ENST00000576019 TRIP11Q15643 1979 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 PTPRJQ12913 1337 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 A0A1B0GWB2 263 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 MGAT4DA6NG13 374 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 SLC22A20A6NK97 555 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 B4DXG7 233 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 DYNC1I1O14576 645 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 B4GALT5O43286 388 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 SNAI2O43623 268 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 CRTAPO75718 401 aaPredicted RBP4.58□□□□□ -1.68
VPS53-219ENST00000576019 CST4P01036 141 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 SNRPCP09234 159 aaKnown RBP4.58□□□□□ -1.68
VPS53-219ENST00000576019 ZNF26P17031 533 aaPredicted RBP4.58□□□□□ -1.68
VPS53-219ENST00000576019 SYT1P21579 422 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 ACVRL1P37023 503 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 GPM6AP51674 278 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 EFNA3P52797 238 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 OR2B6P58173 313 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 UBE2G2P60604 165 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 LAMTOR4Q0VGL1 99 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 PIGHQ14442 188 aaPredicted RBP4.58□□□□□ -1.68
VPS53-219ENST00000576019 SIX1Q15475 284 aaPredicted RBP4.58□□□□□ -1.68
VPS53-219ENST00000576019 DEFB133Q30KQ1 61 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 KRTAP15-1Q3LI76 137 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 UTF1Q5T230 341 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 PRMT9Q6P2P2 845 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 RFWD3Q6PCD5 774 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 GDPGP1Q6ZNW5 385 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 C9orf47Q6ZRZ4 202 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 LINC00336Q6ZUF6 198 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 ABHD12BQ7Z5M8 362 aaPredicted RBP4.58□□□□□ -1.68
VPS53-219ENST00000576019 LRRC49Q8IUZ0 686 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 PDIK1LQ8N165 341 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 PRELID2Q8N945 189 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 FDCSPQ8NFU4 85 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 FLVCR1-AS1Q8TAF5 88 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 C17orf50Q8WW18 174 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 DUS3LQ96G46 650 aaKnown RBP4.58□□□□□ -1.68
VPS53-219ENST00000576019 NMUR2Q9GZQ4 415 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 SCAND2PQ9GZW5 306 aaPredicted RBP4.58□□□□□ -1.68
VPS53-219ENST00000576019 C1orf198Q9H425 327 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 OR2S2Q9NQN1 319 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 SLC17A7Q9P2U7 560 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 B4GALT7Q9UBV7 327 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 CLEC2DQ9UHP7 191 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 PYGO1Q9Y3Y4 419 aa4.58□□□□□ -1.68
VPS53-219ENST00000576019 GTF3C1Q12789 2109 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 C1orf232A0A0U1RR37 186 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 A0A1B0GTH9 108 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 TMEM150BA6NC51 233 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 LOC110117498-PIK3R3F6TDL0 507 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 SMLR1H3BR10 107 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 BRI3O95415 125 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 IGHV2-5P01817 119 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 FGF1P05230 155 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 SHMT2P34897 504 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 NUDT1P36639 197 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 HNRNPA3P51991 378 aaKnown RBP4.57□□□□□ -1.68
VPS53-219ENST00000576019 MAPRE2Q15555 327 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 NDUFAF6Q330K2 333 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 NSUN5P1Q3KNT7 163 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 ZNF691Q5VV52 312 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 RNLSQ5VYX0 342 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 ADNP2Q6IQ32 1131 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 UFSP1Q6NVU6 142 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 EMBQ6PCB8 327 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 TMPRSS11AQ6ZMR5 421 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 GPRIN3Q6ZVF9 776 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 PLCZ1Q86YW0 608 aa4.57□□□□□ -1.68
VPS53-219ENST00000576019 PIANPQ8IYJ0 282 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms