RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 NPIPB4C9JG80 1138 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 H0YIZ8 118 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 H2AFB1P0C5Y9 115 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 ABOP16442 354 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 BCKDHBP21953 392 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 APOBEC1P41238 236 aaKnown RBP13.87□□□□□ -0.19
NUP88-207ENST00000573584 GPR85P60893 370 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 RNF4P78317 190 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 SRSF3P84103 164 aaKnown RBP13.87□□□□□ -0.19
NUP88-207ENST00000573584 NAAAQ02083 359 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 PLAC9Q5JTB6 97 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 THAP3Q8WTV1 239 aaPredicted RBP13.87□□□□□ -0.19
NUP88-207ENST00000573584 TPSD1Q9BZJ3 242 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 C5orf66Q9H5L9 145 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 CYTL1Q9NRR1 136 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 A0A0A6YYD4 124 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 SOCS1O15524 211 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 FOLR1P15328 257 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 OR1D5P58170 312 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 FOXK1P85037 733 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 C17orf67Q0P5P2 114 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 SLC9A3R2Q15599 337 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 DDIT4LQ96D03 193 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 CDC6Q99741 560 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 RAB33BQ9H082 229 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 MLXQ9UH92 298 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 GPR132Q9UNW8 380 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 MRPS28Q9Y2Q9 187 aaKnown RBP13.87□□□□□ -0.19
NUP88-207ENST00000573584 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 SHISA7A6NL88 538 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 SHISA8B8ZZ34 492 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 ADAP1O75689 374 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 CD38P28907 300 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 PNLIPRP3Q17RR3 467 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 PLEKHN1Q494U1 663 aaPredicted RBP13.87□□□□□ -0.19
NUP88-207ENST00000573584 BANF2Q9H503 90 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 SEC61A2Q9H9S3 476 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 SLC2A4RGQ9NR83 387 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 POLR1DQ9Y2S0 133 aa13.87□□□□□ -0.19
NUP88-207ENST00000573584 GSTP1P09211 210 aaKnown RBP13.86□□□□□ -0.19
NUP88-207ENST00000573584 SLC2A1P11166 492 aa13.86□□□□□ -0.19
NUP88-207ENST00000573584 PI3P19957 117 aa13.86□□□□□ -0.19
NUP88-207ENST00000573584 LAP3P28838 519 aa13.86□□□□□ -0.19
NUP88-207ENST00000573584 CLEC18BQ6UXF7 455 aa13.86□□□□□ -0.19
NUP88-207ENST00000573584 ABHD12BQ7Z5M8 362 aaPredicted RBP13.86□□□□□ -0.19
NUP88-207ENST00000573584 CBLN2Q8IUK8 224 aa13.86□□□□□ -0.19
NUP88-207ENST00000573584 TMEM230Q96A57 120 aa13.86□□□□□ -0.19
NUP88-207ENST00000573584 CNTNAP3BQ96NU0 1288 aa13.86□□□□□ -0.19
NUP88-207ENST00000573584 SERINC1Q9NRX5 453 aa13.86□□□□□ -0.19
NUP88-207ENST00000573584 PRR13Q9NZ81 148 aa13.86□□□□□ -0.19
NUP88-207ENST00000573584 VSTM2BA6NLU5 285 aa13.86□□□□□ -0.19
NUP88-207ENST00000573584 ZNF354AO60765 605 aaPredicted RBP13.86□□□□□ -0.19
NUP88-207ENST00000573584 GIMD1P0DJR0 217 aa13.86□□□□□ -0.19
NUP88-207ENST00000573584 HIST1H1DP16402 221 aaKnown RBP13.86□□□□□ -0.19
NUP88-207ENST00000573584 FOXF1Q12946 379 aa13.86□□□□□ -0.19
NUP88-207ENST00000573584 HFEQ30201 348 aa13.86□□□□□ -0.19
NUP88-207ENST00000573584 C14orf28Q4W4Y0 310 aa13.86□□□□□ -0.19
NUP88-207ENST00000573584 VAX1Q5SQQ9 334 aa13.86□□□□□ -0.19
NUP88-207ENST00000573584 SPAG16Q8N0X2 631 aa13.86□□□□□ -0.19
NUP88-207ENST00000573584 ARRDC1Q8N5I2 433 aa13.86□□□□□ -0.19
NUP88-207ENST00000573584 KCNG3Q8TAE7 436 aa13.86□□□□□ -0.19
NUP88-207ENST00000573584 SOX7Q9BT81 388 aa13.86□□□□□ -0.19
NUP88-207ENST00000573584 TLNRD1Q9H1K6 362 aa13.86□□□□□ -0.19
NUP88-207ENST00000573584 B3GALT5Q9Y2C3 310 aa13.86□□□□□ -0.19
NUP88-207ENST00000573584 MSGN1A6NI15 193 aa13.85□□□□□ -0.19
NUP88-207ENST00000573584 LIPT2A6NK58 231 aa13.85□□□□□ -0.19
NUP88-207ENST00000573584 CDC14BO60729 498 aa13.85□□□□□ -0.19
NUP88-207ENST00000573584 SFT2D2O95562 160 aa13.85□□□□□ -0.19
NUP88-207ENST00000573584 OR3A4PP47883 348 aa13.85□□□□□ -0.19
NUP88-207ENST00000573584 H3F3CQ6NXT2 135 aa13.85□□□□□ -0.19
NUP88-207ENST00000573584 ZNF585AQ6P3V2 769 aa13.85□□□□□ -0.19
NUP88-207ENST00000573584 NAA40Q86UY6 237 aa13.85□□□□□ -0.19
NUP88-207ENST00000573584 BHLHE23Q8NDY6 225 aa13.85□□□□□ -0.19
NUP88-207ENST00000573584 RAB18Q9NP72 206 aa13.85□□□□□ -0.19
NUP88-207ENST00000573584 TREM1Q9NP99 234 aa13.85□□□□□ -0.19
NUP88-207ENST00000573584 RPH3AQ9Y2J0 694 aaPredicted RBP13.85□□□□□ -0.19
NUP88-207ENST00000573584 PVALBP20472 110 aaPredicted RBP13.85□□□□□ -0.19
NUP88-207ENST00000573584 TMEM50BP56557 158 aa13.85□□□□□ -0.19
NUP88-207ENST00000573584 SMAD2Q15796 467 aaKnown RBP13.85□□□□□ -0.19
NUP88-207ENST00000573584 OR5AS1Q8N127 324 aa13.85□□□□□ -0.19
NUP88-207ENST00000573584 OR2AJ1Q8NGZ0 328 aa13.85□□□□□ -0.19
NUP88-207ENST00000573584 CYYR1Q96J86 154 aa13.85□□□□□ -0.19
NUP88-207ENST00000573584 TMEM59Q9BXS4 323 aa13.85□□□□□ -0.19
NUP88-207ENST00000573584 TMEM231Q9H6L2 316 aa13.85□□□□□ -0.19
NUP88-207ENST00000573584 OR5AC2Q9NZP5 309 aa13.85□□□□□ -0.19
NUP88-207ENST00000573584 FLVCR1Q9Y5Y0 555 aa13.85□□□□□ -0.19
NUP88-207ENST00000573584 LHFPL6Q9Y693 200 aa13.85□□□□□ -0.19
NUP88-207ENST00000573584 A0A1B0GX78 115 aa13.84□□□□□ -0.19
NUP88-207ENST00000573584 A0A1W2PP11 408 aa13.84□□□□□ -0.19
NUP88-207ENST00000573584 ZNF705EA8MWA4 302 aaPredicted RBP13.84□□□□□ -0.19
NUP88-207ENST00000573584 NUDT19A8MXV4 375 aa13.84□□□□□ -0.19
NUP88-207ENST00000573584 RAD51DO75771 328 aa13.84□□□□□ -0.19
NUP88-207ENST00000573584 F12P00748 615 aaPredicted RBP13.84□□□□□ -0.19
NUP88-207ENST00000573584 FAM157CP0CG43 387 aa13.84□□□□□ -0.19
NUP88-207ENST00000573584 ACTBL2Q562R1 376 aa13.84□□□□□ -0.19
NUP88-207ENST00000573584 C10orf91Q5T1B1 145 aa13.84□□□□□ -0.19
NUP88-207ENST00000573584 THEM4Q5T1C6 240 aa13.84□□□□□ -0.19
NUP88-207ENST00000573584 OR4A4PQ8NGN8 299 aa13.84□□□□□ -0.19
NUP88-207ENST00000573584 C1orf147Q96MC9 270 aaPredicted RBP13.84□□□□□ -0.19
NUP88-207ENST00000573584 MESP1Q9BRJ9 268 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms