RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 RELL2Q8NC24 303 aaPredicted RBP20.14■□□□□ 0.82
VPS53-211ENST00000571805 PPP1R1CQ8WVI7 109 aa20.14■□□□□ 0.82
VPS53-211ENST00000571805 SPACA9Q96E40 222 aaPredicted RBP20.14■□□□□ 0.82
VPS53-211ENST00000571805 SHDQ96IW2 340 aa20.14■□□□□ 0.82
VPS53-211ENST00000571805 SLC25A32Q9H2D1 315 aa20.14■□□□□ 0.82
VPS53-211ENST00000571805 AKIRIN1Q9H9L7 192 aaPredicted RBP20.14■□□□□ 0.82
VPS53-211ENST00000571805 GPR84Q9NQS5 396 aa20.14■□□□□ 0.82
VPS53-211ENST00000571805 MRPS28Q9Y2Q9 187 aaKnown RBP20.14■□□□□ 0.82
VPS53-211ENST00000571805 OR2F2O95006 317 aa20.14■□□□□ 0.81
VPS53-211ENST00000571805 QDPRP09417 244 aa20.14■□□□□ 0.81
VPS53-211ENST00000571805 TBPP20226 339 aa20.14■□□□□ 0.81
VPS53-211ENST00000571805 ATP1B3P54709 279 aa20.14■□□□□ 0.81
VPS53-211ENST00000571805 OR2F1Q13607 317 aa20.14■□□□□ 0.81
VPS53-211ENST00000571805 CCL1P22362 96 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 SFTPDP35247 375 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 SPERTQ8NA61 448 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 SLC26A1Q9H2B4 701 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 COMMD9Q9P000 198 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 GPR160Q9UJ42 338 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 RNF222A6NCQ9 220 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 D6RAR5 112 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 PMP2P02689 132 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 DCNP07585 359 aaKnown RBP20.13■□□□□ 0.81
VPS53-211ENST00000571805 ZNF43P17038 809 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 EPHA8P29322 1005 aaPredicted RBP20.13■□□□□ 0.81
VPS53-211ENST00000571805 AVPR2P30518 371 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 OR3A4PP47883 348 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 TMEM176BQ3YBM2 270 aaPredicted RBP20.13■□□□□ 0.81
VPS53-211ENST00000571805 LRRC37A5PQ49AS3 106 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 PLAC9Q5JTB6 97 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 PGAP1Q75T13 922 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 COMMD2Q86X83 199 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 CCDC74BQ96LY2 380 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 PHB2Q99623 299 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 DEFB126Q9BYW3 111 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 RASL12Q9NYN1 266 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 ANAPC10Q9UM13 185 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 EML6Q6ZMW3 1958 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 MED12Q93074 2177 aa20.13■□□□□ 0.81
VPS53-211ENST00000571805 AQP7P3A6NL99 342 aa20.12■□□□□ 0.81
VPS53-211ENST00000571805 SOCS1O15524 211 aa20.12■□□□□ 0.81
VPS53-211ENST00000571805 PXDC1Q5TGL8 231 aa20.12■□□□□ 0.81
VPS53-211ENST00000571805 VRK1Q99986 396 aaPredicted RBP20.12■□□□□ 0.81
VPS53-211ENST00000571805 LOC102725191A0A1B0GVB3 256 aa20.12■□□□□ 0.81
VPS53-211ENST00000571805 CDC14BO60729 498 aa20.12■□□□□ 0.81
VPS53-211ENST00000571805 NAT1P18440 290 aa20.12■□□□□ 0.81
VPS53-211ENST00000571805 CXCL12P48061 93 aa20.12■□□□□ 0.81
VPS53-211ENST00000571805 CX3CR1P49238 355 aa20.12■□□□□ 0.81
VPS53-211ENST00000571805 TMEM50BP56557 158 aa20.12■□□□□ 0.81
VPS53-211ENST00000571805 TAGLNQ01995 201 aaKnown RBP20.12■□□□□ 0.81
VPS53-211ENST00000571805 MRPL14Q6P1L8 145 aaKnown RBP20.12■□□□□ 0.81
VPS53-211ENST00000571805 HOGA1Q86XE5 327 aa20.12■□□□□ 0.81
VPS53-211ENST00000571805 STPG2Q8N412 459 aa20.12■□□□□ 0.81
VPS53-211ENST00000571805 OR4K15Q8NH41 348 aa20.12■□□□□ 0.81
VPS53-211ENST00000571805 SSC4DQ8WTU2 575 aa20.12■□□□□ 0.81
VPS53-211ENST00000571805 SLC25A43Q8WUT9 341 aaPredicted RBP20.12■□□□□ 0.81
VPS53-211ENST00000571805 CLDN23Q96B33 292 aa20.12■□□□□ 0.81
VPS53-211ENST00000571805 FAM71F1Q96KD3 344 aaPredicted RBP20.12■□□□□ 0.81
VPS53-211ENST00000571805 DUSP23Q9BVJ7 150 aa20.12■□□□□ 0.81
VPS53-211ENST00000571805 C19orf25Q9UFG5 118 aaPredicted RBP20.12■□□□□ 0.81
VPS53-211ENST00000571805 HDGFL3Q9Y3E1 203 aa20.12■□□□□ 0.81
VPS53-211ENST00000571805 CHCHD2Q9Y6H1 151 aaPredicted RBP20.12■□□□□ 0.81
VPS53-211ENST00000571805 MPIG6BO95866 241 aa20.11■□□□□ 0.81
VPS53-211ENST00000571805 IFNA6P05013 189 aa20.11■□□□□ 0.81
VPS53-211ENST00000571805 ADH6P28332 368 aa20.11■□□□□ 0.81
VPS53-211ENST00000571805 PPP1R3BQ86XI6 285 aa20.11■□□□□ 0.81
VPS53-211ENST00000571805 PXT1Q8NFP0 134 aa20.11■□□□□ 0.81
VPS53-211ENST00000571805 OR4K17Q8NGC6 315 aa20.11■□□□□ 0.81
VPS53-211ENST00000571805 KCNG3Q8TAE7 436 aa20.11■□□□□ 0.81
VPS53-211ENST00000571805 ELP5Q8TE02 316 aa20.11■□□□□ 0.81
VPS53-211ENST00000571805 KANTRA0A1W2PQU2 76 aa20.1■□□□□ 0.81
VPS53-211ENST00000571805 BCL2L11O43521 198 aa20.1■□□□□ 0.81
VPS53-211ENST00000571805 SIGLEC6O43699 453 aa20.1■□□□□ 0.81
VPS53-211ENST00000571805 DUS4LO95620 317 aaKnown RBP20.1■□□□□ 0.81
VPS53-211ENST00000571805 GSTP1P09211 210 aaKnown RBP20.1■□□□□ 0.81
VPS53-211ENST00000571805 AKR1C4P17516 323 aa20.1■□□□□ 0.81
VPS53-211ENST00000571805 ACOT7LQ6ZUV0 252 aa20.1■□□□□ 0.81
VPS53-211ENST00000571805 FBXW5Q969U6 566 aa20.1■□□□□ 0.81
VPS53-211ENST00000571805 CYYR1Q96J86 154 aa20.1■□□□□ 0.81
VPS53-211ENST00000571805 DBX1A6NMT0 343 aa20.1■□□□□ 0.81
VPS53-211ENST00000571805 ZNF726A6NNF4 738 aa20.1■□□□□ 0.81
VPS53-211ENST00000571805 E9PLN8 166 aa20.1■□□□□ 0.81
VPS53-211ENST00000571805 EIF1P41567 113 aaKnown RBP20.1■□□□□ 0.81
VPS53-211ENST00000571805 MICBQ29980 383 aa20.1■□□□□ 0.81
VPS53-211ENST00000571805 FAM57BQ71RH2 274 aa20.1■□□□□ 0.81
VPS53-211ENST00000571805 MARCH1Q8TCQ1 289 aa20.1■□□□□ 0.81
VPS53-211ENST00000571805 CASTOR1Q8WTX7 329 aa20.1■□□□□ 0.81
VPS53-211ENST00000571805 RAB3CQ96E17 227 aa20.1■□□□□ 0.81
VPS53-211ENST00000571805 BANF2Q9H503 90 aa20.1■□□□□ 0.81
VPS53-211ENST00000571805 A0A1W2PP11 408 aa20.09■□□□□ 0.81
VPS53-211ENST00000571805 BET1O15155 118 aa20.09■□□□□ 0.81
VPS53-211ENST00000571805 HIST1H1DP16402 221 aaKnown RBP20.09■□□□□ 0.81
VPS53-211ENST00000571805 VAMP1P23763 118 aa20.09■□□□□ 0.81
VPS53-211ENST00000571805 FAM74A1Q5RGS3 127 aa20.09■□□□□ 0.81
VPS53-211ENST00000571805 DOK3Q7L591 496 aa20.09■□□□□ 0.81
VPS53-211ENST00000571805 NAA40Q86UY6 237 aa20.09■□□□□ 0.81
VPS53-211ENST00000571805 TMEM41AQ96HV5 264 aa20.09■□□□□ 0.81
VPS53-211ENST00000571805 CFAP54Q96N23 3096 aa20.09■□□□□ 0.81
VPS53-211ENST00000571805 NCOA6Q14686 2063 aaPredicted RBP20.09■□□□□ 0.81
VPS53-211ENST00000571805 IGKV1-9A0A0C4DH69 117 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms