RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 BLKP51451 505 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 PNLIPRP2P54317 469 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 DEFB133Q30KQ1 61 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 SLC29A4Q7RTT9 530 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 FOXRED2Q8IWF2 684 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 C11orf40Q8WZ69 217 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 OR5AC2Q9NZP5 309 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 COPS7AQ9UBW8 275 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 NDRG3Q9UGV2 375 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 CYB5R1Q9UHQ9 305 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 A0A0A6YYD4 124 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 TEX13DA0A0J9YY54 714 aaPredicted RBP11.73□□□□□ -0.53
CLN3-210ENST00000563874 ZNF98A6NK75 572 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 HTR3BO95264 441 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 CLDN6P56747 220 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 ZNF585AQ6P3V2 769 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 ZFP82Q8N141 532 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 RNF133Q8WVZ7 376 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 MAFIPQ8WZ33 124 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 ARL11Q969Q4 196 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 C5orf66Q9H5L9 145 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 CYTL1Q9NRR1 136 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 TMEM131Q92545 1883 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 DBX1A6NMT0 343 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 HSD11B1P28845 292 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 MMP16P51512 607 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 TLE3Q04726 772 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 PLAC9Q5JTB6 97 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 KLHL24Q6TFL4 600 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 GLIPR1L1Q6UWM5 242 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 HOGA1Q86XE5 327 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 OR10H5Q8NGA6 315 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 OR10S1Q8NGN2 331 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 OR51F2Q8NH61 342 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 RNF141Q8WVD5 230 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 KCNK17Q96T54 332 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 SEC61A2Q9H9S3 476 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 MMACHCQ9Y4U1 282 aa11.73□□□□□ -0.53
CLN3-210ENST00000563874 A0A1W2PQD3 144 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 AGPAT2O15120 278 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 ZNF354AO60765 605 aaPredicted RBP11.72□□□□□ -0.53
CLN3-210ENST00000563874 BPNT1O95861 308 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 IGHMP01871 453 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 EN2P19622 333 aaPredicted RBP11.72□□□□□ -0.53
CLN3-210ENST00000563874 OR3A4PP47883 348 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 BIDP55957 195 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 HSF1Q00613 529 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 Q3ZCU0 254 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 DNM1P34Q6PK57 102 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 SPAG16Q8N0X2 631 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 OR5D14Q8NGL3 314 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 TERB2Q8NHR7 220 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 OIT3Q8WWZ8 545 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 TMEM230Q96A57 120 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 TPSD1Q9BZJ3 242 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 SDHAF3Q9NRP4 125 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 GSKIPQ9P0R6 139 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 CLEC1BQ9P126 229 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 SUSD2Q9UGT4 822 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 ASCC3Q8N3C0 2202 aaKnown RBP11.72□□□□□ -0.53
CLN3-210ENST00000563874 CPAMD8Q8IZJ3 1885 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 TLCD2A6NGC4 264 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 F8VVB4 439 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 F8VWA3 439 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 SDCBPO00560 298 aaPredicted RBP11.72□□□□□ -0.53
CLN3-210ENST00000563874 CDAP32320 146 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 FASLGP48023 281 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 TDGQ13569 410 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 ZNF124Q15973 351 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 AKIRIN2Q53H80 203 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 FAHD2BQ6P2I3 314 aaPredicted RBP11.72□□□□□ -0.53
CLN3-210ENST00000563874 CLEC18BQ6UXF7 455 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 SLC30A7Q8NEW0 376 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 STOML3Q8TAV4 291 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 DAZLQ92904 295 aaKnown RBP11.72□□□□□ -0.53
CLN3-210ENST00000563874 FAHD2AQ96GK7 314 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 CNTNAP3BQ96NU0 1288 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 CMSS1Q9BQ75 279 aaKnown RBP11.72□□□□□ -0.53
CLN3-210ENST00000563874 LPAR5Q9H1C0 372 aa11.72□□□□□ -0.53
CLN3-210ENST00000563874 ESRP2Q9H6T0 727 aaKnown RBP11.72□□□□□ -0.53
CLN3-210ENST00000563874 RAD51DO75771 328 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 CD79AP11912 226 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 ZNF20P17024 532 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 FBXW4P57775 412 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 DCAF7P61962 342 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 ANKRD39Q53RE8 183 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 TMEM128Q5BJH2 165 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 H1FNTQ75WM6 255 aaPredicted RBP11.71□□□□□ -0.53
CLN3-210ENST00000563874 RAB11FIP2Q7L804 512 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 ABHD12BQ7Z5M8 362 aaPredicted RBP11.71□□□□□ -0.53
CLN3-210ENST00000563874 OR5D18Q8NGL1 313 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 RAB3CQ96E17 227 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 FAM71F1Q96KD3 344 aaPredicted RBP11.71□□□□□ -0.53
CLN3-210ENST00000563874 C12orf57Q99622 126 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 NKX2-4Q9H2Z4 354 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 MMP17Q9ULZ9 603 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 POLR1DQ9Y2S0 133 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 FAM157CP0CG43 387 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 MPZP25189 248 aa11.71□□□□□ -0.53
CLN3-210ENST00000563874 ARL4DP49703 201 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms