RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 FAM57BQ71RH2 274 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 MUC20Q8N307 709 aaPredicted RBP11.31□□□□□ -0.6
CLK3-213ENST00000563842 FTMTQ8N4E7 242 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 SPICQ8N5J4 248 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 OR2AE1Q8NHA4 323 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 ASB17Q8WXJ9 295 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 ITFG2Q969R8 447 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 CNN2Q99439 309 aaKnown RBP11.31□□□□□ -0.6
CLK3-213ENST00000563842 PKP2Q99959 881 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 GABARAPL3Q9BY60 117 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 MROQ9BYG7 248 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 GCM1Q9NP62 436 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 DNAJC27Q9NZQ0 273 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 ZNF391Q9UJN7 358 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 PCDHB10Q9UN67 800 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 ARHGAP32A7KAX9 2087 aa11.31□□□□□ -0.6
CLK3-213ENST00000563842 CCDC182A6NF36 153 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 ACOD1A6NK06 481 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 ANKRD30BLA7E2S9 258 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 FAM157AC9JC47 383 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 F5H5P2 479 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 H0YL77 283 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 TMEM178BH3BS89 294 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 ZNF254O75437 659 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 IGHV2-5P01817 119 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 HLA-DPB1P04440 258 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 SBK2P0C263 348 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 CA6P23280 308 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 CPT2P23786 658 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 EPHA2P29317 976 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 CD200P41217 278 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 GATA4P43694 442 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 CDC42P60953 191 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 BTG1P62324 171 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 EFNB1P98172 346 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 CR1LQ2VPA4 569 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 FAM120AOSQ5T036 256 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 AADACL4Q5VUY2 407 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 KLHL36Q8N4N3 616 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 TEX29Q8N6K0 151 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 PLPP7Q8NBV4 271 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 CSNK2A3Q8NEV1 391 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 OR8J1Q8NGP2 316 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 OR11L1Q8NGX0 322 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 TMEM186Q96B77 213 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 REEP6Q96HR9 211 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 AMELYQ99218 206 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 ADAT1Q9BUB4 502 aaKnown RBP11.3□□□□□ -0.6
CLK3-213ENST00000563842 RIBC2Q9H4K1 309 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 BRD7Q9NPI1 651 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 HAO2Q9NYQ3 351 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 UBAP1Q9NZ09 502 aa11.3□□□□□ -0.6
CLK3-213ENST00000563842 H3BNX3 289 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 FSTL3O95633 263 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 IGHV2-70P01814 119 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 SRD5A1P18405 259 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 DCTDP32321 178 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 MDH2P40926 338 aaKnown RBP11.29□□□□□ -0.6
CLK3-213ENST00000563842 MMP16P51512 607 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 ALDH3A2P51648 485 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 PRSS12P56730 875 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 PSMA6P60900 246 aaKnown RBP11.29□□□□□ -0.6
CLK3-213ENST00000563842 POU4F2Q12837 409 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 LRRN1Q6UXK5 716 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 PRSS45Q7RTY3 260 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 MOGAT3Q86VF5 341 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 LRRC28Q86X40 367 aaPredicted RBP11.29□□□□□ -0.6
CLK3-213ENST00000563842 ZNF679Q8IYX0 411 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 OR56B2PQ8NGI1 322 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 TRUB1Q8WWH5 349 aaKnown RBP11.29□□□□□ -0.6
CLK3-213ENST00000563842 RFKQ969G6 155 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 SGK3Q96BR1 496 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 IL4I1Q96RQ9 567 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 C9orf16Q9BUW7 83 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 FN3KRPQ9HA64 309 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 C14orf119Q9NWQ9 140 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 HIF1ANQ9NWT6 349 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 USE1Q9NZ43 259 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 WARS2Q9UGM6 360 aaKnown RBP11.29□□□□□ -0.6
CLK3-213ENST00000563842 LRP12Q9Y561 859 aa11.29□□□□□ -0.6
CLK3-213ENST00000563842 ZNF670-ZNF695F2Z2N8 137 aa11.28□□□□□ -0.6
CLK3-213ENST00000563842 FOXH1O75593 365 aa11.28□□□□□ -0.6
CLK3-213ENST00000563842 ALPLP05186 524 aa11.28□□□□□ -0.6
CLK3-213ENST00000563842 MRPL3P09001 348 aaKnown RBP11.28□□□□□ -0.6
CLK3-213ENST00000563842 GNALP38405 381 aa11.28□□□□□ -0.6
CLK3-213ENST00000563842 RIDAP52758 137 aaKnown RBP11.28□□□□□ -0.6
CLK3-213ENST00000563842 FAM3AP98173 230 aa11.28□□□□□ -0.6
CLK3-213ENST00000563842 ROM1Q03395 351 aa11.28□□□□□ -0.6
CLK3-213ENST00000563842 MAB21L1Q13394 359 aa11.28□□□□□ -0.6
CLK3-213ENST00000563842 TMED1Q13445 227 aa11.28□□□□□ -0.6
CLK3-213ENST00000563842 ZNF829Q3KNS6 432 aaPredicted RBP11.28□□□□□ -0.6
CLK3-213ENST00000563842 OR8S1Q8NH09 359 aa11.28□□□□□ -0.6
CLK3-213ENST00000563842 ZNF420Q8TAQ5 688 aaPredicted RBP11.28□□□□□ -0.6
CLK3-213ENST00000563842 Q8TCH9 128 aa11.28□□□□□ -0.6
CLK3-213ENST00000563842 STMN2Q93045 179 aa11.28□□□□□ -0.6
CLK3-213ENST00000563842 OR8B4Q96RC9 309 aa11.28□□□□□ -0.6
CLK3-213ENST00000563842 SIGLEC11Q96RL6 698 aa11.28□□□□□ -0.6
CLK3-213ENST00000563842 PATZ1Q9HBE1 687 aaKnown RBP11.28□□□□□ -0.6
CLK3-213ENST00000563842 LPAR2Q9HBW0 351 aa11.28□□□□□ -0.6
CLK3-213ENST00000563842 S100A14Q9HCY8 104 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms