RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 XRCC2O43543 280 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 ADAM11O75078 769 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 IFNA21P01568 189 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 COX6B1P14854 86 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 PTGER4P35408 488 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 S100A10P60903 97 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 PPP1CBP62140 327 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 INSL4Q14641 139 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 GDPGP1Q6ZNW5 385 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 Q6ZTK2 550 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 PIP4P1Q86T03 277 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 HGDQ93099 445 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 SLC35B4Q969S0 331 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 FAM3DQ96BQ1 224 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 LAMP3Q9UQV4 416 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 KCNIP3Q9Y2W7 256 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 RBMX2Q9Y388 322 aaKnown RBP8.16□□□□□ -1.1
VPS39-205ENST00000562258 PCDH15Q96QU1 1955 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 MEIKINA0A087WXM9 373 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 A0A1W2PRD5 423 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 A0A1W2PRF3 423 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 A0A1W2PRM7 423 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 NOTOA8MTQ0 251 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 ZIC3O60481 467 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 SCG5P05408 212 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 CTSSP25774 331 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 TGFBR1P36897 503 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 TLE1Q04724 770 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 YIF1BQ5BJH7 314 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 XKRXQ6PP77 449 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 ZDHHC23Q8IYP9 409 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 FAM185AQ8N0U4 392 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 NPEPL1Q8NDH3 523 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 OR4K15Q8NH41 348 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 KCNG3Q8TAE7 436 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 DUS3LQ96G46 650 aaKnown RBP8.16□□□□□ -1.1
VPS39-205ENST00000562258 CACNG6Q9BXT2 260 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 LIN7BQ9HAP6 207 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 ASCL3Q9NQ33 180 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 TAS2R5Q9NYW4 299 aa8.16□□□□□ -1.1
VPS39-205ENST00000562258 M0R233 179 aa8.15□□□□□ -1.1
VPS39-205ENST00000562258 WBP4O75554 376 aaKnown RBP8.15□□□□□ -1.1
VPS39-205ENST00000562258 HEXAP06865 529 aa8.15□□□□□ -1.1
VPS39-205ENST00000562258 ZNF17P17021 662 aa8.15□□□□□ -1.1
VPS39-205ENST00000562258 ACHEP22303 614 aa8.15□□□□□ -1.1
VPS39-205ENST00000562258 MEX3BQ6ZN04 569 aaKnown RBP8.15□□□□□ -1.1
VPS39-205ENST00000562258 C1orf87Q8N0U7 546 aa8.15□□□□□ -1.1
VPS39-205ENST00000562258 OR1M1Q8NGA1 313 aa8.15□□□□□ -1.1
VPS39-205ENST00000562258 FOXRED1Q96CU9 486 aaPredicted RBP8.15□□□□□ -1.1
VPS39-205ENST00000562258 DMRTB1Q96MA1 342 aa8.15□□□□□ -1.1
VPS39-205ENST00000562258 ADAT1Q9BUB4 502 aaKnown RBP8.15□□□□□ -1.1
VPS39-205ENST00000562258 TBC1D24Q9ULP9 559 aa8.15□□□□□ -1.1
VPS39-205ENST00000562258 ADAMTS9Q9P2N4 1935 aa8.15□□□□□ -1.1
VPS39-205ENST00000562258 USP9XQ93008 2570 aaPredicted RBP8.15□□□□□ -1.1
VPS39-205ENST00000562258 H7C2Y5 167 aa8.15□□□□□ -1.1
VPS39-205ENST00000562258 ZFPL1O95159 310 aa8.15□□□□□ -1.1
VPS39-205ENST00000562258 RAB3DO95716 219 aa8.15□□□□□ -1.1
VPS39-205ENST00000562258 GSTP1P09211 210 aaKnown RBP8.15□□□□□ -1.1
VPS39-205ENST00000562258 C4BPBP20851 252 aa8.15□□□□□ -1.1
VPS39-205ENST00000562258 HLXQ14774 488 aaPredicted RBP8.15□□□□□ -1.1
VPS39-205ENST00000562258 SPCS2Q15005 226 aa8.15□□□□□ -1.1
VPS39-205ENST00000562258 CDK5R1Q15078 307 aa8.15□□□□□ -1.1
VPS39-205ENST00000562258 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.15□□□□□ -1.1
VPS39-205ENST00000562258 OR13G1Q8NGZ3 307 aa8.15□□□□□ -1.1
VPS39-205ENST00000562258 ST7LQ8TDW4 575 aa8.15□□□□□ -1.1
VPS39-205ENST00000562258 PELI1Q96FA3 418 aa8.15□□□□□ -1.1
VPS39-205ENST00000562258 C4orf45Q96LM5 186 aa8.15□□□□□ -1.1
VPS39-205ENST00000562258 GABARAPL1Q9H0R8 117 aa8.15□□□□□ -1.1
VPS39-205ENST00000562258 DPAGT1Q9H3H5 408 aa8.15□□□□□ -1.1
VPS39-205ENST00000562258 MED19A0JLT2 244 aaPredicted RBP8.15□□□□□ -1.11
VPS39-205ENST00000562258 ARRDC5A6NEK1 342 aa8.15□□□□□ -1.11
VPS39-205ENST00000562258 H3BUI4 141 aa8.15□□□□□ -1.11
VPS39-205ENST00000562258 KLK2P20151 261 aa8.15□□□□□ -1.11
VPS39-205ENST00000562258 LIMK1P53667 647 aa8.15□□□□□ -1.11
VPS39-205ENST00000562258 CEBPEQ15744 281 aa8.15□□□□□ -1.11
VPS39-205ENST00000562258 PRR30Q53SZ7 412 aaPredicted RBP8.15□□□□□ -1.11
VPS39-205ENST00000562258 WDR38Q5JTN6 314 aa8.15□□□□□ -1.11
VPS39-205ENST00000562258 C8orf82Q6P1X6 216 aaPredicted RBP8.15□□□□□ -1.11
VPS39-205ENST00000562258 DRAM2Q6UX65 266 aa8.15□□□□□ -1.11
VPS39-205ENST00000562258 GLRX5Q86SX6 157 aa8.15□□□□□ -1.11
VPS39-205ENST00000562258 WNT2BQ93097 391 aa8.15□□□□□ -1.11
VPS39-205ENST00000562258 OR2J1Q9GZK6 312 aa8.15□□□□□ -1.11
VPS39-205ENST00000562258 ADAM19Q9H013 955 aa8.15□□□□□ -1.11
VPS39-205ENST00000562258 DUSP21Q9H596 190 aa8.15□□□□□ -1.11
VPS39-205ENST00000562258 ZCCHC4Q9H5U6 513 aa8.15□□□□□ -1.11
VPS39-205ENST00000562258 GFOD1Q9NXC2 390 aa8.15□□□□□ -1.11
VPS39-205ENST00000562258 B3GNT2Q9NY97 397 aa8.15□□□□□ -1.11
VPS39-205ENST00000562258 NLKQ9UBE8 527 aa8.15□□□□□ -1.11
VPS39-205ENST00000562258 TMEM129A0AVI4 362 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 ZNF736B4DX44 427 aaPredicted RBP8.14□□□□□ -1.11
VPS39-205ENST00000562258 IGHV3-13P01766 116 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 IGHV3-7P01780 117 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 TNFRSF1AP19438 455 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 CPT2P23786 658 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 KIR2DL3P43628 341 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 TNFAIP6P98066 277 aaPredicted RBP8.14□□□□□ -1.11
VPS39-205ENST00000562258 RTP5Q14D33 572 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 HFEQ30201 348 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 C9orf152Q5JTZ5 239 aa8.14□□□□□ -1.11
VPS39-205ENST00000562258 SFXN4Q6P4A7 337 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms