RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 FJX1Q86VR8 437 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 COMMD7Q86VX2 200 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 COMMD2Q86X83 199 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 WDFY1Q8IWB7 410 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 WDSUB1Q8N9V3 476 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 PNLDC1Q8NA58 520 aaKnown RBP6.43□□□□□ -1.38
VPS13C-206ENST00000558338 ACBD4Q8NC06 268 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 CHST4Q8NCG5 386 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 OR8B12Q8NGG6 310 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 OR13C9Q8NGT0 318 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 DVL3Q92997 716 aaPredicted RBP6.43□□□□□ -1.38
VPS13C-206ENST00000558338 MR1Q95460 341 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 INTS12Q96CB8 462 aaKnown RBP6.43□□□□□ -1.38
VPS13C-206ENST00000558338 C10orf35Q96D05 121 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 ADAT3Q96EY9 351 aaPredicted RBP6.43□□□□□ -1.38
VPS13C-206ENST00000558338 ANGPTL4Q9BY76 406 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 TMEM185BQ9H7F4 350 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 OCIAD1Q9NX40 245 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 GLTPQ9NZD2 209 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 GHRLQ9UBU3 117 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 KCNN3Q9UGI6 736 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 DKKL1Q9UK85 242 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 KLK13Q9UKR3 277 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 HRH3Q9Y5N1 445 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 SESN1Q9Y6P5 492 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 RALGAPA1Q6GYQ0 2036 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 ASXL3Q9C0F0 2248 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 A0A1B0GTI1 187 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 LOC101059948A0A1B0GTJ6 334 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 TMEM235A6NFC5 223 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 RFPL4AA6NLU0 287 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 NPIPA2E9PIF3 369 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 RFPL4AL1F8VTS6 287 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 NPIPA3F8WFD2 350 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 RAB27BO00194 218 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 SHOXO15266 292 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 LMX1BO60663 402 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 ZNF735P0CB33 412 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 COX6A1P12074 109 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 CXCL2P19875 107 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 CD34P28906 385 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 THBS4P35443 961 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 FOLR3P41439 243 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 CBX5P45973 191 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 CLDN17P56750 224 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 UBE2MP61081 183 aaKnown RBP6.43□□□□□ -1.38
VPS13C-206ENST00000558338 QRFPP83859 136 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 MC2RQ01718 297 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 SRSF4Q08170 494 aaKnown RBP6.43□□□□□ -1.38
VPS13C-206ENST00000558338 ARL6IP1Q15041 203 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 PNLIPRP3Q17RR3 467 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 CDNFQ49AH0 187 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 CARD17Q5XLA6 110 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 LCN10Q6JVE6 187 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 TMUB2Q71RG4 321 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 ZNF101Q8IZC7 436 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 GALNT16Q8N428 558 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 ZNF283Q8N7M2 679 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 GJC3Q8NFK1 279 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 OR52N4Q8NGI2 321 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 OR5M8Q8NGP6 311 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 OR5M1Q8NGP8 315 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 OR10R2Q8NGX6 335 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 KCNG3Q8TAE7 436 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 OR51E1Q8TCB6 317 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 PAQR8Q8TEZ7 354 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 SCARB1Q8WTV0 552 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 TMEM54Q969K7 222 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 IMMP1LQ96LU5 166 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 SFXN2Q96NB2 322 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 MESP1Q9BRJ9 268 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 URM1Q9BTM9 101 aaKnown RBP6.43□□□□□ -1.38
VPS13C-206ENST00000558338 TINAGL1Q9GZM7 467 aaPredicted RBP6.43□□□□□ -1.38
VPS13C-206ENST00000558338 NELFAQ9H3P2 528 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 MED9Q9NWA0 146 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 ASH2LQ9UBL3 628 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 MRPS28Q9Y2Q9 187 aaKnown RBP6.43□□□□□ -1.38
VPS13C-206ENST00000558338 PTRH2Q9Y3E5 179 aaKnown RBP6.43□□□□□ -1.38
VPS13C-206ENST00000558338 UNC80Q8N2C7 3258 aa6.43□□□□□ -1.38
VPS13C-206ENST00000558338 ARID1BQ8NFD5 2236 aaPredicted RBP6.42□□□□□ -1.38
VPS13C-206ENST00000558338 CACNA1EQ15878 2313 aa6.42□□□□□ -1.38
VPS13C-206ENST00000558338 FXYD6-FXYD2A0A087WZ82 144 aa6.42□□□□□ -1.38
VPS13C-206ENST00000558338 NSG1A0A0A6YYJ2 146 aa6.42□□□□□ -1.38
VPS13C-206ENST00000558338 A0A0D9SG52 128 aa6.42□□□□□ -1.38
VPS13C-206ENST00000558338 A0A0U1RQV5 110 aa6.42□□□□□ -1.38
VPS13C-206ENST00000558338 M0QYG6 137 aa6.42□□□□□ -1.38
VPS13C-206ENST00000558338 ARPC5O15511 151 aa6.42□□□□□ -1.38
VPS13C-206ENST00000558338 LAMTOR5O43504 91 aa6.42□□□□□ -1.38
VPS13C-206ENST00000558338 CD8AP01732 235 aa6.42□□□□□ -1.38
VPS13C-206ENST00000558338 IFNA6P05013 189 aa6.42□□□□□ -1.38
VPS13C-206ENST00000558338 HCKP08631 526 aa6.42□□□□□ -1.38
VPS13C-206ENST00000558338 VSIG8P0DPA2 414 aa6.42□□□□□ -1.38
VPS13C-206ENST00000558338 RRASP10301 218 aa6.42□□□□□ -1.38
VPS13C-206ENST00000558338 LIFP15018 202 aa6.42□□□□□ -1.38
VPS13C-206ENST00000558338 ZNF84P51523 738 aa6.42□□□□□ -1.38
VPS13C-206ENST00000558338 H2BFSP57053 126 aa6.42□□□□□ -1.38
VPS13C-206ENST00000558338 RPS27AP62979 156 aaKnown RBP6.42□□□□□ -1.38
VPS13C-206ENST00000558338 UBA52P62987 128 aaKnown RBP6.42□□□□□ -1.38
VPS13C-206ENST00000558338 ZFP36L1Q07352 338 aaKnown RBP6.42□□□□□ -1.38
VPS13C-206ENST00000558338 UNC119Q13432 240 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms