RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 MOGAT3Q86VF5 341 aa8.33□□□□□ -1.08
SCFD1-220ENST00000556486 OR8G5Q8NG78 346 aa8.33□□□□□ -1.08
SCFD1-220ENST00000556486 OR5L1Q8NGL2 311 aa8.33□□□□□ -1.08
SCFD1-220ENST00000556486 OR13G1Q8NGZ3 307 aa8.33□□□□□ -1.08
SCFD1-220ENST00000556486 OR1F12Q8NHA8 337 aa8.33□□□□□ -1.08
SCFD1-220ENST00000556486 SLC7A13Q8TCU3 470 aa8.33□□□□□ -1.08
SCFD1-220ENST00000556486 ITLN1Q8WWA0 313 aa8.33□□□□□ -1.08
SCFD1-220ENST00000556486 Q96M85 177 aa8.33□□□□□ -1.08
SCFD1-220ENST00000556486 ZNF570Q96NI8 536 aa8.33□□□□□ -1.08
SCFD1-220ENST00000556486 SLC30A2Q9BRI3 323 aa8.33□□□□□ -1.08
SCFD1-220ENST00000556486 SSBP3Q9BWW4 388 aaPredicted RBP8.33□□□□□ -1.08
SCFD1-220ENST00000556486 NDEL1Q9GZM8 345 aa8.33□□□□□ -1.08
SCFD1-220ENST00000556486 C11orf54Q9H0W9 315 aaPredicted RBP8.33□□□□□ -1.08
SCFD1-220ENST00000556486 TMEM165Q9HC07 324 aa8.33□□□□□ -1.08
SCFD1-220ENST00000556486 CMTM6Q9NX76 183 aa8.33□□□□□ -1.08
SCFD1-220ENST00000556486 ING3Q9NXR8 418 aa8.33□□□□□ -1.08
SCFD1-220ENST00000556486 SIGLEC7Q9Y286 467 aa8.33□□□□□ -1.08
SCFD1-220ENST00000556486 RNF114Q9Y508 228 aa8.33□□□□□ -1.08
SCFD1-220ENST00000556486 COL7A1Q02388 2944 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 IGHV2-70DA0A0C4DH43 119 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 CLPSL1A2RUU4 121 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 PRSS29PA6NIE9 313 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 IQCF6A8MYZ5 107 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 J3KTA2 159 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 KHDRBS3O75525 346 aaKnown RBP8.32□□□□□ -1.08
SCFD1-220ENST00000556486 TNFRSF6BO95407 300 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 TROVE2P10155 538 aaKnown RBP eCLIP8.32□□□□□ -1.08
SCFD1-220ENST00000556486 RPL4P36578 427 aaKnown RBP8.32□□□□□ -1.08
SCFD1-220ENST00000556486 ERFP50548 548 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 BPIFB3P59826 476 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 KRR1Q13601 381 aaKnown RBP8.32□□□□□ -1.08
SCFD1-220ENST00000556486 BEAN1Q3B7T3 259 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 KRTAP27-1Q3LI81 207 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 IFI44LQ53G44 452 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 CCDC92Q53HC0 331 aaPredicted RBP8.32□□□□□ -1.08
SCFD1-220ENST00000556486 CGB2Q6NT52 195 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 C8orf82Q6P1X6 216 aaPredicted RBP8.32□□□□□ -1.08
SCFD1-220ENST00000556486 TSEN54Q7Z6J9 526 aaKnown RBP8.32□□□□□ -1.08
SCFD1-220ENST00000556486 SLC15A3Q8IY34 581 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 OR10S1Q8NGN2 331 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 Q8TCH9 128 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 RAB40AQ8WXH6 277 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 SLC7A6Q92536 515 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 APOBEC3DQ96AK3 386 aaPredicted RBP8.32□□□□□ -1.08
SCFD1-220ENST00000556486 COQ7Q99807 217 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 HDHD2Q9H0R4 259 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 SYT4Q9H2B2 425 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 RHCGQ9UBD6 479 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 MIOXQ9UGB7 285 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 ENPP4Q9Y6X5 453 aa8.32□□□□□ -1.08
SCFD1-220ENST00000556486 DOCK11Q5JSL3 2073 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 LOC100653049A0A140TA62 436 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 KIR2DS1A0A191URI9 304 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 A0A1B0GUS0 222 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 SRRM5B3KS81 715 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 H0YL77 283 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 CXCR6O00574 342 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 RER1O15258 196 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 MLNRO43193 412 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 SLC16A7O60669 478 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 KRT34O76011 436 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 NDUFB2O95178 105 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 GYPEP15421 78 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 PSMB10P40306 273 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 GPR4P46093 362 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 YAP1P46937 504 aaKnown RBP8.31□□□□□ -1.08
SCFD1-220ENST00000556486 SRP9P49458 86 aaKnown RBP8.31□□□□□ -1.08
SCFD1-220ENST00000556486 FXYD6P3P58550 94 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 COX10Q12887 443 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 RSPO1Q2MKA7 263 aaPredicted RBP8.31□□□□□ -1.08
SCFD1-220ENST00000556486 ZNF404Q494X3 552 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 LIN54Q6MZP7 749 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 TBPL2Q6SJ96 375 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 BTNL3Q6UXE8 466 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 DPY19L2P2Q6ZN68 376 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 KLBQ86Z14 1044 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 POU5F2Q8N7G0 328 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 GJC3Q8NFK1 279 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 RP9Q8TA86 221 aaKnown RBP8.31□□□□□ -1.08
SCFD1-220ENST00000556486 MRAPQ8TCY5 172 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 ERGIC1Q969X5 290 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 NEIL1Q96FI4 390 aaPredicted RBP8.31□□□□□ -1.08
SCFD1-220ENST00000556486 PLEKHA8Q96JA3 519 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 ZNF582Q96NG8 517 aaPredicted RBP8.31□□□□□ -1.08
SCFD1-220ENST00000556486 HOPXQ9BPY8 73 aaPredicted RBP8.31□□□□□ -1.08
SCFD1-220ENST00000556486 NUAK2Q9H093 628 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.31□□□□□ -1.08
SCFD1-220ENST00000556486 LHFPL6Q9Y693 200 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 CAPN7Q9Y6W3 813 aa8.31□□□□□ -1.08
SCFD1-220ENST00000556486 IGLV1-36A0A0B4J1U3 117 aa8.3□□□□□ -1.08
SCFD1-220ENST00000556486 LRRC30A6NM36 301 aa8.3□□□□□ -1.08
SCFD1-220ENST00000556486 NME4O00746 187 aa8.3□□□□□ -1.08
SCFD1-220ENST00000556486 NDUFAB1O14561 156 aa8.3□□□□□ -1.08
SCFD1-220ENST00000556486 PHYHO14832 338 aa8.3□□□□□ -1.08
SCFD1-220ENST00000556486 PPP1R3DO95685 299 aa8.3□□□□□ -1.08
SCFD1-220ENST00000556486 PTBP3O95758 552 aaKnown RBP8.3□□□□□ -1.08
SCFD1-220ENST00000556486 RPS2P15880 293 aaKnown RBP8.3□□□□□ -1.08
SCFD1-220ENST00000556486 H2AFXP16104 143 aaPredicted RBP8.3□□□□□ -1.08
SCFD1-220ENST00000556486 CRABP1P29762 137 aa8.3□□□□□ -1.08
SCFD1-220ENST00000556486 OMPP47874 163 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms