RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 UBE2V1Q13404 147 aa8.53□□□□□ -1.04
SIX4-202ENST00000554079 CACUL1Q86Y37 369 aa8.53□□□□□ -1.04
SIX4-202ENST00000554079 APCDD1LQ8NCL9 501 aa8.53□□□□□ -1.04
SIX4-202ENST00000554079 OR5T1Q8NG75 326 aa8.53□□□□□ -1.04
SIX4-202ENST00000554079 KCNE4Q8WWG9 221 aa8.53□□□□□ -1.04
SIX4-202ENST00000554079 CORO2AQ92828 525 aa8.53□□□□□ -1.04
SIX4-202ENST00000554079 TMEM106AQ96A25 262 aa8.53□□□□□ -1.04
SIX4-202ENST00000554079 FAM3DQ96BQ1 224 aa8.53□□□□□ -1.04
SIX4-202ENST00000554079 ZG16BQ96DA0 208 aa8.53□□□□□ -1.04
SIX4-202ENST00000554079 SLC41A2Q96JW4 573 aa8.53□□□□□ -1.04
SIX4-202ENST00000554079 SLC35E1Q96K37 410 aa8.53□□□□□ -1.04
SIX4-202ENST00000554079 SPACA7Q96KW9 195 aa8.53□□□□□ -1.04
SIX4-202ENST00000554079 Q96M85 177 aa8.53□□□□□ -1.04
SIX4-202ENST00000554079 SF3B5Q9BWJ5 86 aaKnown RBP8.53□□□□□ -1.04
SIX4-202ENST00000554079 OR11A1Q9GZK7 315 aa8.53□□□□□ -1.04
SIX4-202ENST00000554079 SRD5A3Q9H8P0 318 aa8.53□□□□□ -1.04
SIX4-202ENST00000554079 CREBZFQ9NS37 354 aa8.53□□□□□ -1.04
SIX4-202ENST00000554079 CLDND1Q9NY35 253 aa8.53□□□□□ -1.04
SIX4-202ENST00000554079 SLC13A4Q9UKG4 626 aa8.53□□□□□ -1.04
SIX4-202ENST00000554079 PIN4Q9Y237 131 aaKnown RBP8.53□□□□□ -1.04
SIX4-202ENST00000554079 KCNE3Q9Y6H6 103 aa8.53□□□□□ -1.04
SIX4-202ENST00000554079 NUMA1Q14980 2115 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 RBFOX3A6NFN3 312 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 A6NIZ1 184 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 B4DEV8 164 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 K7N7A8 449 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 SLC17A2O00624 439 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 RPP14O95059 124 aaKnown RBP8.52□□□□□ -1.05
SIX4-202ENST00000554079 SCGB1D1O95968 90 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 HOXB2P14652 356 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 SERPINA2P20848 420 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 UCP3P55916 312 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 TMEM33P57088 247 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 RAB11BQ15907 218 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 PHF19Q5T6S3 580 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 SAMD7Q7Z3H4 446 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 MDGA2Q7Z553 956 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 LINC01551Q86U37 167 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 LRP11Q86VZ4 500 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 ZNF584Q8IVC4 421 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 ZNF679Q8IYX0 411 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 ARL14EPQ8N8R7 260 aaPredicted RBP8.52□□□□□ -1.05
SIX4-202ENST00000554079 TMEM230Q96A57 120 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 ACY3Q96HD9 319 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 SMIM3Q9BZL3 60 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 TRIM2Q9C040 744 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 PRSS16Q9NQE7 514 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 TMEM242Q9NWH2 141 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 RNF115Q9Y4L5 304 aa8.52□□□□□ -1.05
SIX4-202ENST00000554079 TRAV39A0A0B4J263 110 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 H3BRB1 525 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 ZNF217O75362 1048 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 LYPD3O95274 346 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 SFT2D2O95562 160 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 PNPP00491 289 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 S100A10P60903 97 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 ARF5P84085 180 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 MLC1Q15049 377 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 PRAMEF14Q5SWL7 426 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 SLC24A5Q71RS6 500 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 ZNF595Q8IYB9 648 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 OR51L1Q8NGJ5 315 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 ZNF417Q8TAU3 575 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 ZNRF4Q8WWF5 429 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 ERGIC1Q969X5 290 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 NMNAT2Q9BZQ4 307 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 ZCCHC3Q9NUD5 404 aaKnown RBP8.51□□□□□ -1.05
SIX4-202ENST00000554079 PRR13Q9NZ81 148 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 GSKIPQ9P0R6 139 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 CLDN16Q9Y5I7 305 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 A0A1B0GV50 99 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 CASTOR2A6NHX0 329 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 F5H5T6 163 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 CLDN34H7C241 214 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 K7ERQ8 282 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 M0QZ24 198 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 ZIC2O95409 532 aaPredicted RBP8.51□□□□□ -1.05
SIX4-202ENST00000554079 IRF1P10914 325 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 CCR5P51681 352 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 FGF8P55075 233 aaPredicted RBP8.51□□□□□ -1.05
SIX4-202ENST00000554079 RND3P61587 244 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 CCL20P78556 96 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 PMPCAQ10713 525 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 ICAM4Q14773 271 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 ANKRD55Q3KP44 614 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 RNF219Q5W0B1 726 aaPredicted RBP8.51□□□□□ -1.05
SIX4-202ENST00000554079 SPSB3Q6PJ21 355 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 TEX43Q6ZNM6 134 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 ZNF627Q7L945 461 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 HOGA1Q86XE5 327 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 WDFY1Q8IWB7 410 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 CMTM1Q8IZ96 169 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 CYB561D1Q8N8Q1 229 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 COX18Q8N8Q8 333 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 SLC26A10Q8NG04 563 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 OR10AC1Q8NH08 325 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 AQP3Q92482 292 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 SLC22A12Q96S37 553 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 VPS25Q9BRG1 176 aa8.51□□□□□ -1.05
SIX4-202ENST00000554079 NIPSNAP3BQ9BS92 247 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms