RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 H0YIZ8 118 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 DBHP09172 617 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 CNR1P21554 472 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 C17orf67Q0P5P2 114 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.31□□□□□ -0.28
USP28-214ENST00000545540 SLC25A42Q86VD7 318 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 CBLN2Q8IUK8 224 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 SLC22A24Q8N4F4 322 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 PNLDC1Q8NA58 520 aaKnown RBP13.31□□□□□ -0.28
USP28-214ENST00000545540 OR10R2Q8NGX6 335 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 HDHD3Q9BSH5 251 aaPredicted RBP13.31□□□□□ -0.28
USP28-214ENST00000545540 ZNF576Q9H609 170 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 C12orf10Q9HB07 376 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 CHMP1AQ9HD42 196 aaPredicted RBP13.31□□□□□ -0.28
USP28-214ENST00000545540 ZFHX4Q86UP3 3567 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 GPR179Q6PRD1 2367 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 MEGF11A6BM72 1044 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 SULT2B1O00204 365 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 CD74P04233 296 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 QDPRP09417 244 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 SERPINA2P20848 420 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 ID4P47928 161 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 DAP3P51398 398 aaKnown RBP13.31□□□□□ -0.28
USP28-214ENST00000545540 SNTB1Q13884 538 aaKnown RBP13.31□□□□□ -0.28
USP28-214ENST00000545540 PDCD1Q15116 288 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 C1orf100Q5SVJ3 147 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 TFAP2EQ6VUC0 442 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 KCNRGQ8N5I3 272 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 OR2AJ1Q8NGZ0 328 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 PIGTQ969N2 578 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 RAB3CQ96E17 227 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 PRRT1Q99946 306 aa13.31□□□□□ -0.28
USP28-214ENST00000545540 ZNF41P51814 821 aaPredicted RBP13.3□□□□□ -0.28
USP28-214ENST00000545540 S100A10P60903 97 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 PPIAP62937 165 aaKnown RBP13.3□□□□□ -0.28
USP28-214ENST00000545540 CHAF1BQ13112 559 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 PLEKHN1Q494U1 663 aaPredicted RBP13.3□□□□□ -0.28
USP28-214ENST00000545540 D2HGDHQ8N465 521 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 ALX4Q9H161 411 aaPredicted RBP13.3□□□□□ -0.28
USP28-214ENST00000545540 LPAR5Q9H1C0 372 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 GAREM1Q9H706 876 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 SLC17A5Q9NRA2 495 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 OR5AC2Q9NZP5 309 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 SHANK1Q9Y566 2161 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 SFTPBP07988 381 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 UBCP0CG48 685 aaKnown RBP13.3□□□□□ -0.28
USP28-214ENST00000545540 FSTP19883 344 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 SPINK2P20155 84 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 LAP3P28838 519 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 SCAND1P57086 179 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 NXPH1P58417 271 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 RAB30Q15771 203 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 MPPED2Q15777 294 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 NKAIN1Q4KMZ8 207 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 ANKRD37Q7Z713 158 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 LYPD6Q86Y78 171 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 FOXRED1Q96CU9 486 aaPredicted RBP13.3□□□□□ -0.28
USP28-214ENST00000545540 EDEM2Q9BV94 578 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 BARX1Q9HBU1 254 aaPredicted RBP13.3□□□□□ -0.28
USP28-214ENST00000545540 C10orf142B7Z368 130 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 DNASE2O00115 360 aaPredicted RBP13.3□□□□□ -0.28
USP28-214ENST00000545540 TO15178 435 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 BCL2L11O43521 198 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 AQP8O94778 261 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 WDPCPO95876 746 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 IGLV3-19P01714 112 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 PNLIPP16233 465 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 ZNF17P17021 662 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 MMP16P51512 607 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 DNM1P34Q6PK57 102 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 ACOT7LQ6ZUV0 252 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 HDDC2Q7Z4H3 204 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 UEVLDQ8IX04 471 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 POC1BQ8TC44 478 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 MARC2Q969Z3 335 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 DDIT4LQ96D03 193 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 METTL8Q9H825 291 aaKnown RBP13.3□□□□□ -0.28
USP28-214ENST00000545540 SCPEP1Q9HB40 452 aa13.3□□□□□ -0.28
USP28-214ENST00000545540 ZNF701Q9NV72 531 aaPredicted RBP13.3□□□□□ -0.28
USP28-214ENST00000545540 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 MED19A0JLT2 244 aaPredicted RBP13.29□□□□□ -0.28
USP28-214ENST00000545540 QRFPP83859 136 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 SMAD4Q13485 552 aaKnown RBP13.29□□□□□ -0.28
USP28-214ENST00000545540 NKAPLQ5M9Q1 402 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 C20orf196Q8IYI0 205 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 GNRHR2Q96P88 292 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 SMIM3Q9BZL3 60 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 HRH4Q9H3N8 390 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 C5orf66Q9H5L9 145 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 FAM221AA4D161 298 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 OR5H15A6NDH6 313 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 ACTL6AO96019 429 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 PATE4P0C8F1 98 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 FAHP16930 419 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 TOMM20Q15388 145 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 GUSBP11Q6P575 273 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 DRAM2Q6UX65 266 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 HSD17B13Q7Z5P4 300 aaPredicted RBP13.29□□□□□ -0.28
USP28-214ENST00000545540 OR5AS1Q8N127 324 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 ZSCAN4Q8NAM6 433 aaPredicted RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms