RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 F8W036 122 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 RFC3P40938 356 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 BLOC1S1P78537 153 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 TLE3Q04726 772 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 C17orf67Q0P5P2 114 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 EIF5AL1Q6IS14 154 aaKnown RBP12.18□□□□□ -0.46
VPS33A-208ENST00000543633 ZSCAN4Q8NAM6 433 aaPredicted RBP12.18□□□□□ -0.46
VPS33A-208ENST00000543633 ADAMTS17Q8TE56 1095 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 C11orf40Q8WZ69 217 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 CTSFQ9UBX1 484 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 LPAR3Q9UBY5 353 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 MRPS28Q9Y2Q9 187 aaKnown RBP12.18□□□□□ -0.46
VPS33A-208ENST00000543633 CACNA1CQ13936 2221 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 LOC100509620A0A075B734 347 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 PQLC2LA1A4F0 135 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 SIGLEC5O15389 551 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 PMP2P02689 132 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 FAM157CP0CG43 387 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 HOXB1P14653 301 aaPredicted RBP12.18□□□□□ -0.46
VPS33A-208ENST00000543633 CCL1P22362 96 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 LAP3P28838 519 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 FOXK1P85037 733 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 POU3F1Q03052 451 aaPredicted RBP12.18□□□□□ -0.46
VPS33A-208ENST00000543633 SIGLEC14Q08ET2 396 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 SQSTM1Q13501 440 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 SURF2Q15527 256 aaPredicted RBP12.18□□□□□ -0.46
VPS33A-208ENST00000543633 OR7A5Q15622 319 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 NSDHLQ15738 373 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 SMAD2Q15796 467 aaKnown RBP12.18□□□□□ -0.46
VPS33A-208ENST00000543633 SGCAQ16586 387 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 GUCA2BQ16661 112 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 HYAL4Q2M3T9 481 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 SLC22A6Q4U2R8 563 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 Q7L0L9 218 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 LHFPL1Q86WI0 220 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 ANGPTL5Q86XS5 388 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 SKA3Q8IX90 412 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 KDM8Q8N371 416 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 PLPP5Q8NEB5 264 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 OR56B1Q8NGI3 324 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 PAQR8Q8TEZ7 354 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.18□□□□□ -0.46
VPS33A-208ENST00000543633 TMEM230Q96A57 120 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 RAB3CQ96E17 227 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 C1orf147Q96MC9 270 aaPredicted RBP12.18□□□□□ -0.46
VPS33A-208ENST00000543633 SAV1Q9H4B6 383 aaPredicted RBP12.18□□□□□ -0.46
VPS33A-208ENST00000543633 ZNF304Q9HCX3 659 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 WIF1Q9Y5W5 379 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 POMT1Q9Y6A1 747 aa12.18□□□□□ -0.46
VPS33A-208ENST00000543633 COL6A3P12111 3177 aa12.17□□□□□ -0.46
VPS33A-208ENST00000543633 IGKV1D-43A0A0B4J1Z2 117 aa12.17□□□□□ -0.46
VPS33A-208ENST00000543633 C13orf42A0A1B0GVH6 325 aa12.17□□□□□ -0.46
VPS33A-208ENST00000543633 FIGNL2A6NMB9 653 aa12.17□□□□□ -0.46
VPS33A-208ENST00000543633 EFNA3P52797 238 aa12.17□□□□□ -0.46
VPS33A-208ENST00000543633 TAS2R46P59540 309 aa12.17□□□□□ -0.46
VPS33A-208ENST00000543633 HSD11B2P80365 405 aa12.17□□□□□ -0.46
VPS33A-208ENST00000543633 THEM4Q5T1C6 240 aa12.17□□□□□ -0.46
VPS33A-208ENST00000543633 H3F3CQ6NXT2 135 aa12.17□□□□□ -0.46
VPS33A-208ENST00000543633 TMPRSS9Q7Z410 1059 aa12.17□□□□□ -0.46
VPS33A-208ENST00000543633 OR5AS1Q8N127 324 aa12.17□□□□□ -0.46
VPS33A-208ENST00000543633 OR4A4PQ8NGN8 299 aa12.17□□□□□ -0.46
VPS33A-208ENST00000543633 OR13C9Q8NGT0 318 aa12.17□□□□□ -0.46
VPS33A-208ENST00000543633 RNF138Q8WVD3 245 aa12.17□□□□□ -0.46
VPS33A-208ENST00000543633 SMIM8Q96KF7 97 aa12.17□□□□□ -0.46
VPS33A-208ENST00000543633 C2orf50Q96LR7 162 aa12.17□□□□□ -0.46
VPS33A-208ENST00000543633 URM1Q9BTM9 101 aaKnown RBP12.17□□□□□ -0.46
VPS33A-208ENST00000543633 CHRDQ9H2X0 955 aa12.17□□□□□ -0.46
VPS33A-208ENST00000543633 PTGES2Q9H7Z7 377 aa12.17□□□□□ -0.46
VPS33A-208ENST00000543633 BIN3Q9NQY0 253 aa12.17□□□□□ -0.46
VPS33A-208ENST00000543633 ZFP57Q9NU63 452 aa12.17□□□□□ -0.46
VPS33A-208ENST00000543633 GHRLQ9UBU3 117 aa12.17□□□□□ -0.46
VPS33A-208ENST00000543633 RPH3AQ9Y2J0 694 aaPredicted RBP12.17□□□□□ -0.46
VPS33A-208ENST00000543633 MEMO1Q9Y316 297 aa12.17□□□□□ -0.46
VPS33A-208ENST00000543633 LIPT2A6NK58 231 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 H0YIZ8 118 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 MFNGO00587 321 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 CDC14BO60729 498 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 ZNF217O75362 1048 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 GLULP15104 373 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 ABOP16442 354 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 IL11P20809 199 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 PAX6P26367 422 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 ECI1P42126 302 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 RAB13P51153 203 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 S100A12P80511 92 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 SLC25A53Q5H9E4 307 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 TMEM71Q6P5X7 295 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 OGFOD3Q6PK18 319 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 ZNF101Q8IZC7 436 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 OR10S1Q8NGN2 331 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 OR5H2Q8NGV7 314 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 LMX1AQ8TE12 382 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 RRNAD1Q96FB5 475 aaKnown RBP12.16□□□□□ -0.46
VPS33A-208ENST00000543633 GUCD1Q96NT3 240 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 TMEM59Q9BXS4 323 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 MRPL13Q9BYD1 178 aaKnown RBP12.16□□□□□ -0.46
VPS33A-208ENST00000543633 VN1R1Q9GZP7 353 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 C5orf66Q9H5L9 145 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 UQCC1Q9NVA1 299 aa12.16□□□□□ -0.46
VPS33A-208ENST00000543633 PCNX3Q9H6A9 2034 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms