RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	GUCA2B	Q16661	112 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	LIN54	Q6MZP7	749 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	GABRG1	Q8N1C3	465 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	IFI44	Q8TCB0	444 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	C2CD4C	Q8TF44	421 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	FAM71F1	Q96KD3	344 aa	Predicted RBP	13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	CDX2	Q99626	313 aa	Predicted RBP	13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	NICN1	Q9BSH3	213 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	FAM206A	Q9NX38	181 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	PMS2P1	A4D2B8	440 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	AMY2A	P04746	511 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	UBB	P0CG47	229 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	UBC	P0CG48	685 aa	Known RBP	13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	RFC3	P40938	356 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	RPS27A	P62979	156 aa	Known RBP	13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	UBA52	P62987	128 aa	Known RBP	13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	SVBP	Q8N300	66 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	C12orf45	Q8N5I9	185 aa	Predicted RBP	13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	NANP	Q8TBE9	248 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	WNT2B	Q93097	391 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	PBOV1	Q9GZY1	135 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	POFUT1	Q9H488	388 aa		13.09	□□□□□ -0.31
DDX55-209	ENST00000542286	LAMA5	O15230	3695 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	SYT7	O43581	403 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	SPP1	P10451	314 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	P2RY4	P51582	365 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	RPS18	P62269	152 aa	Known RBP	13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	UNC119	Q13432	240 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	RBMS2	Q15434	407 aa	Known RBP	13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	MICB	Q29980	383 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	DNM1P46	Q6ZS02	220 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	ZNF546	Q86UE3	836 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	UEVLD	Q8IX04	471 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	OR2M3	Q8NG83	312 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	OR5D18	Q8NGL1	313 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	SFT2D1	Q8WV19	159 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	RNF133	Q8WVZ7	376 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	MR1	Q95460	341 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	ALKBH4	Q9NXW9	302 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	GDF2	Q9UK05	429 aa	Predicted RBP	13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	TMEM218	A2RU14	115 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	TRAF3IP2	O43734	574 aa	Predicted RBP	13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	CCL3	P10147	92 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	GNB3	P16520	340 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	CD96	P40200	585 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	ZNF468	Q5VIY5	522 aa	Predicted RBP	13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	PAQR4	Q8N4S7	273 aa	Predicted RBP	13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	OR4K17	Q8NGC6	315 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	GPX8	Q8TED1	209 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	SPACA9	Q96E40	222 aa	Predicted RBP	13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	UCN2	Q96RP3	112 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	WDR13	Q9H1Z4	485 aa		13.08	□□□□□ -0.32
DDX55-209	ENST00000542286	PTRH2	Q9Y3E5	179 aa	Known RBP	13.08	□□□□□ -0.32
DDX55-209	ENST00000542286		A6NIZ1	184 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	RFPL4A	A6NLU0	287 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	RFPL4AL1	F8VTS6	287 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	CCS	O14618	274 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	EIF3G	O75821	320 aa	Known RBP eCLIP	13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	RAB3D	O95716	219 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	AKAIN1	P0CW23	69 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	RAP1B	P61224	184 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	RAP1A	P62834	184 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	MRPS10	P82664	201 aa	Known RBP	13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	PHYHD1	Q5SRE7	291 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	ZNF600	Q6ZNG1	722 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	MISP	Q8IVT2	679 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	ZFP82	Q8N141	532 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	GLYATL2	Q8WU03	294 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	MRPL13	Q9BYD1	178 aa	Known RBP	13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	PRO3102	Q9H379	93 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	PIGM	Q9H3S5	423 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	COLQ	Q9Y215	455 aa	Predicted RBP	13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	FABP1	P07148	127 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	QDPR	P09417	244 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	CSF1	P09603	554 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	PGA4	P0DJD7	388 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	PGA3	P0DJD8	388 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	LUM	P51884	338 aa	Predicted RBP	13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	ABHD12B	Q7Z5M8	362 aa	Predicted RBP	13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	ADGRE4P	Q86SQ3	457 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	CCDC36	Q8IYA8	594 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	LRRC18	Q8N456	261 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	LIN37	Q96GY3	246 aa	Predicted RBP	13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	SLC6A7	Q99884	636 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	MRI1	Q9BV20	369 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	BANF2	Q9H503	90 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	SDHAF3	Q9NRP4	125 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	PILRB	Q9UKJ0	227 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	RHBDD3	Q9Y3P4	386 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	CHCHD2	Q9Y6H1	151 aa	Predicted RBP	13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	ZFHX4	Q86UP3	3567 aa		13.07	□□□□□ -0.32
DDX55-209	ENST00000542286	SPEN	Q96T58	3664 aa	Known RBP	13.06	□□□□□ -0.32
DDX55-209	ENST00000542286	ZNHIT1	O43257	154 aa		13.06	□□□□□ -0.32
DDX55-209	ENST00000542286	UMOD	P07911	640 aa		13.06	□□□□□ -0.32
DDX55-209	ENST00000542286	LAP3	P28838	519 aa		13.06	□□□□□ -0.32
DDX55-209	ENST00000542286	ZP4	Q12836	540 aa		13.06	□□□□□ -0.32
DDX55-209	ENST00000542286	TOMM20	Q15388	145 aa		13.06	□□□□□ -0.32
DDX55-209	ENST00000542286	DNM1P34	Q6PK57	102 aa		13.06	□□□□□ -0.32
DDX55-209	ENST00000542286	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	13.06	□□□□□ -0.32
DDX55-209	ENST00000542286	FAM219A	Q8IW50	185 aa		13.06	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms