RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 BPIFB3P59826 476 aa12.74□□□□□ -0.37
CLSTN3-213ENST00000541953 SLC35F1Q5T1Q4 408 aa12.74□□□□□ -0.37
CLSTN3-213ENST00000541953 LDLRAD3Q86YD5 345 aa12.74□□□□□ -0.37
CLSTN3-213ENST00000541953 C11orf53Q8IXP5 236 aa12.74□□□□□ -0.37
CLSTN3-213ENST00000541953 RNF148Q8N7C7 305 aa12.74□□□□□ -0.37
CLSTN3-213ENST00000541953 CYB561A3Q8NBI2 242 aa12.74□□□□□ -0.37
CLSTN3-213ENST00000541953 OR56B2PQ8NGI1 322 aa12.74□□□□□ -0.37
CLSTN3-213ENST00000541953 OR51L1Q8NGJ5 315 aa12.74□□□□□ -0.37
CLSTN3-213ENST00000541953 RP9Q8TA86 221 aaKnown RBP12.74□□□□□ -0.37
CLSTN3-213ENST00000541953 DYRK2Q92630 601 aa12.74□□□□□ -0.37
CLSTN3-213ENST00000541953 KCTD14Q9BQ13 255 aaPredicted RBP12.74□□□□□ -0.37
CLSTN3-213ENST00000541953 VIPAS39Q9H9C1 493 aa12.74□□□□□ -0.37
CLSTN3-213ENST00000541953 FN3KRPQ9HA64 309 aa12.74□□□□□ -0.37
CLSTN3-213ENST00000541953 ABCD2Q9UBJ2 740 aa12.74□□□□□ -0.37
CLSTN3-213ENST00000541953 ARPC3O15145 178 aa12.73□□□□□ -0.37
CLSTN3-213ENST00000541953 HLA-DQA2P01906 255 aa12.73□□□□□ -0.37
CLSTN3-213ENST00000541953 GRPP07492 148 aa12.73□□□□□ -0.37
CLSTN3-213ENST00000541953 SELLP14151 372 aa12.73□□□□□ -0.37
CLSTN3-213ENST00000541953 H2AFXP16104 143 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-213ENST00000541953 OTX1P32242 354 aaPredicted RBP12.73□□□□□ -0.37
CLSTN3-213ENST00000541953 NUDT2P50583 147 aa12.73□□□□□ -0.37
CLSTN3-213ENST00000541953 CSNK2BP67870 215 aa12.73□□□□□ -0.37
CLSTN3-213ENST00000541953 MALLQ13021 153 aa12.73□□□□□ -0.37
CLSTN3-213ENST00000541953 METTL11BQ5VVY1 283 aa12.73□□□□□ -0.37
CLSTN3-213ENST00000541953 VMO1Q7Z5L0 202 aa12.73□□□□□ -0.37
CLSTN3-213ENST00000541953 PNKDQ8N490 385 aa12.73□□□□□ -0.37
CLSTN3-213ENST00000541953 ST8SIA4Q92187 359 aa12.73□□□□□ -0.37
CLSTN3-213ENST00000541953 DDOQ99489 341 aa12.73□□□□□ -0.37
CLSTN3-213ENST00000541953 IFT27Q9BW83 186 aa12.73□□□□□ -0.37
CLSTN3-213ENST00000541953 DCAF13Q9NV06 445 aaKnown RBP12.73□□□□□ -0.37
CLSTN3-213ENST00000541953 DNAJB11Q9UBS4 358 aa12.73□□□□□ -0.37
CLSTN3-213ENST00000541953 AP3M1Q9Y2T2 418 aa12.73□□□□□ -0.37
CLSTN3-213ENST00000541953 SLC22A31A6NKX4 558 aa12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 SLC22A2O15244 555 aa12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 RENP00797 406 aa12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 LHBP01229 141 aa12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 AMY2BP19961 511 aa12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 SLC6A6P31641 620 aa12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 TPTEP56180 551 aa12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 ECH1Q13011 328 aa12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 KLRD1Q13241 179 aa12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 PCK2Q16822 640 aa12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 CD276Q5ZPR3 534 aa12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 FAM216BQ8N7L0 139 aa12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 OR2AJ1Q8NGZ0 328 aa12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 FAM110DQ8TAY7 271 aaPredicted RBP12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 UBE2FQ969M7 185 aa12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 CCL13Q99616 98 aa12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 HOPXQ9BPY8 73 aaPredicted RBP12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 TRIM15Q9C019 465 aa12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 EGLN3Q9H6Z9 239 aa12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 SIRT7Q9NRC8 400 aa12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 MRGBPQ9NV56 204 aa12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 RPUSD1Q9UJJ7 312 aaKnown RBP12.72□□□□□ -0.37
CLSTN3-213ENST00000541953 TRAV38-1A0A0B4J264 116 aa12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 A0A1W2PRD5 423 aa12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 A0A1W2PRF3 423 aa12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 A0A1W2PRM7 423 aa12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 hCG_1807616A0A1W2PRN6 198 aa12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 GGT3PA6NGU5 568 aa12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 A6NLC8 198 aa12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 TIMM23O14925 209 aa12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 GSSP48637 474 aa12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 PRKXP51817 358 aa12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 PSME3P61289 254 aa12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 SPIBQ01892 262 aa12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 PDCD1Q15116 288 aa12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 TEX36Q5VZQ5 186 aa12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 GLYATQ6IB77 296 aa12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 HACD2Q6Y1H2 254 aa12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 PNLDC1Q8NA58 520 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 ZSCAN4Q8NAM6 433 aaPredicted RBP12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 SCCPDHQ8NBX0 429 aa12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 OR8D4Q8NGM9 314 aa12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 TBC1D15Q8TC07 691 aa12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 TCF7L1Q9HCS4 588 aa12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 MRPL15Q9P015 296 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 FAM32AQ9Y421 112 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 N6AMT1Q9Y5N5 214 aa12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 COMMD3-BMI1R4GMX3 469 aa12.71□□□□□ -0.37
CLSTN3-213ENST00000541953 KMT2CQ8NEZ4 4911 aaKnown RBP12.71□□□□□ -0.38
CLSTN3-213ENST00000541953 RNASEK-C17orf49H0YIS7 233 aa12.7□□□□□ -0.38
CLSTN3-213ENST00000541953 GMDSO60547 372 aa12.7□□□□□ -0.38
CLSTN3-213ENST00000541953 LIPFP07098 398 aa12.7□□□□□ -0.38
CLSTN3-213ENST00000541953 SLC36A3Q495N2 470 aa12.7□□□□□ -0.38
CLSTN3-213ENST00000541953 WDR38Q5JTN6 314 aa12.7□□□□□ -0.38
CLSTN3-213ENST00000541953 PGBD2Q6P3X8 592 aa12.7□□□□□ -0.38
CLSTN3-213ENST00000541953 DCXRQ7Z4W1 244 aa12.7□□□□□ -0.38
CLSTN3-213ENST00000541953 Q8N7P7 452 aa12.7□□□□□ -0.38
CLSTN3-213ENST00000541953 OR9Q1Q8NGQ5 310 aa12.7□□□□□ -0.38
CLSTN3-213ENST00000541953 LRRC29Q8WV35 223 aa12.7□□□□□ -0.38
CLSTN3-213ENST00000541953 ZNRD1Q9P1U0 126 aa12.7□□□□□ -0.38
CLSTN3-213ENST00000541953 KIF17Q9P2E2 1029 aa12.7□□□□□ -0.38
CLSTN3-213ENST00000541953 BHLHE40O14503 412 aa12.69□□□□□ -0.38
CLSTN3-213ENST00000541953 ACOT8O14734 319 aa12.69□□□□□ -0.38
CLSTN3-213ENST00000541953 GADD45GO95257 159 aa12.69□□□□□ -0.38
CLSTN3-213ENST00000541953 GYPBP06028 91 aa12.69□□□□□ -0.38
CLSTN3-213ENST00000541953 NOS3P29474 1203 aa12.69□□□□□ -0.38
CLSTN3-213ENST00000541953 MSX2P35548 267 aaPredicted RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms