RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 MMP16P51512 607 aa14.91□□□□□ -0.02
USP28-208ENST00000540438 SNU13P55769 128 aaKnown RBP14.91□□□□□ -0.02
USP28-208ENST00000540438 RAG2P55895 527 aa14.91□□□□□ -0.02
USP28-208ENST00000540438 MRPS10P82664 201 aaKnown RBP14.91□□□□□ -0.02
USP28-208ENST00000540438 ARFRP1Q13795 201 aa14.91□□□□□ -0.02
USP28-208ENST00000540438 ZNF75AQ96N20 296 aa14.91□□□□□ -0.02
USP28-208ENST00000540438 MFFQ9GZY8 342 aa14.91□□□□□ -0.02
USP28-208ENST00000540438 PCED1AQ9H1Q7 454 aa14.91□□□□□ -0.02
USP28-208ENST00000540438 WDR13Q9H1Z4 485 aa14.91□□□□□ -0.02
USP28-208ENST00000540438 MAB21L2Q9Y586 359 aa14.91□□□□□ -0.02
USP28-208ENST00000540438 NSG1A0A0A6YYJ2 146 aa14.91□□□□□ -0.02
USP28-208ENST00000540438 LDOC1O95751 146 aaPredicted RBP14.91□□□□□ -0.02
USP28-208ENST00000540438 RLN2P04090 185 aa14.91□□□□□ -0.02
USP28-208ENST00000540438 CAMK2BQ13554 666 aa14.91□□□□□ -0.02
USP28-208ENST00000540438 C5orf24Q7Z6I8 188 aa14.91□□□□□ -0.02
USP28-208ENST00000540438 RPS19BP1Q86WX3 136 aaKnown RBP14.91□□□□□ -0.02
USP28-208ENST00000540438 BEST3Q8N1M1 668 aa14.91□□□□□ -0.02
USP28-208ENST00000540438 AKR7LQ8NHP1 331 aa14.91□□□□□ -0.02
USP28-208ENST00000540438 HPF1Q9NWY4 346 aa14.91□□□□□ -0.02
USP28-208ENST00000540438 NPTNQ9Y639 398 aa14.91□□□□□ -0.02
USP28-208ENST00000540438 EXPH5Q8NEV8 1989 aa14.91□□□□□ -0.02
USP28-208ENST00000540438 ICE1Q9Y2F5 2266 aa14.91□□□□□ -0.02
USP28-208ENST00000540438 METTL21EPA6NDL7 271 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 MPTX1A8MV57 137 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 ZNF878C9JN71 531 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 NPIPA2E9PIF3 369 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 NPIPA3F8WFD2 350 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 LAMTOR5O43504 91 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 CRYZL1O95825 349 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 ERCC1P07992 297 aaPredicted RBP14.9□□□□□ -0.02
USP28-208ENST00000540438 ZNF735P0CB33 412 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 UBCP0CG48 685 aaKnown RBP14.9□□□□□ -0.02
USP28-208ENST00000540438 B4GALT1P15291 398 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 TCN2P20062 427 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 GABRR1P24046 479 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 ATP1B3P54709 279 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 WIPI1Q5MNZ9 446 aaPredicted RBP14.9□□□□□ -0.02
USP28-208ENST00000540438 LY6G6FQ5SQ64 297 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 THEM4Q5T1C6 240 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 SLC23A3Q6PIS1 610 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 VASH2Q86V25 355 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 TTC9Q92623 222 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 HES7Q9BYE0 225 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 TMPRSS13Q9BYE2 586 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 PROK2Q9HC23 129 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 ZNF208O43345 1280 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 SSX5O60225 188 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 PDGFAP04085 211 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 COX6A1P12074 109 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 CCL2P13500 99 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 CCNOP22674 350 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 GUCA1AP43080 201 aaPredicted RBP14.9□□□□□ -0.02
USP28-208ENST00000540438 CSNK1A1P48729 337 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 ACTBP60709 375 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 ACTG1P63261 375 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 SNAI3Q3KNW1 292 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 ZNF260Q3ZCT1 412 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 UNQ6126/PRO20091Q6UXV3 157 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 OR5AS1Q8N127 324 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 OR14L1PQ8NHC6 308 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 LRRC20Q8TCA0 184 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 LYZL4Q96KX0 146 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 FN3KRPQ9HA64 309 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 B3GNT2Q9NY97 397 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 KCNN3Q9UGI6 736 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 ADAMTS20P59510 1910 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 DMXL2Q8TDJ6 3036 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 IGHV1-45A0A0A0MS14 117 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 SPRY1O43609 319 aaPredicted RBP14.9□□□□□ -0.02
USP28-208ENST00000540438 IFNA6P05013 189 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 GIPP09681 153 aaPredicted RBP14.9□□□□□ -0.02
USP28-208ENST00000540438 CD34P28906 385 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 AKR1C2P52895 323 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 AKR1C1Q04828 323 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 ZP4Q12836 540 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 MFSD13AQ14CX5 517 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 SPINK14Q6IE38 97 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 SLC38A6Q8IZM9 456 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 DEFB123Q8N688 67 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 ELP5Q8TE02 316 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 ZNF845Q96IR2 970 aaPredicted RBP14.9□□□□□ -0.02
USP28-208ENST00000540438 POTEKPQ9BYX7 375 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 GPR173Q9NS66 373 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 C19orf25Q9UFG5 118 aaPredicted RBP14.9□□□□□ -0.02
USP28-208ENST00000540438 PISDQ9UG56 409 aa14.9□□□□□ -0.02
USP28-208ENST00000540438 FAM230AA0A1W2PPH8 454 aa14.89□□□□□ -0.03
USP28-208ENST00000540438 ZIC3O60481 467 aa14.89□□□□□ -0.03
USP28-208ENST00000540438 STK17BO94768 372 aa14.89□□□□□ -0.03
USP28-208ENST00000540438 RAP2BP61225 183 aa14.89□□□□□ -0.03
USP28-208ENST00000540438 AGBL5Q8NDL9 886 aa14.89□□□□□ -0.03
USP28-208ENST00000540438 GUCD1Q96NT3 240 aa14.89□□□□□ -0.03
USP28-208ENST00000540438 RHBDD3Q9Y3P4 386 aa14.89□□□□□ -0.03
USP28-208ENST00000540438 C5orf51A6NDU8 294 aa14.89□□□□□ -0.03
USP28-208ENST00000540438 ADAP1O75689 374 aa14.89□□□□□ -0.03
USP28-208ENST00000540438 AQP8O94778 261 aa14.89□□□□□ -0.03
USP28-208ENST00000540438 TMEM50BP56557 158 aa14.89□□□□□ -0.03
USP28-208ENST00000540438 IL13RA1P78552 427 aa14.89□□□□□ -0.03
USP28-208ENST00000540438 ZNF546Q86UE3 836 aa14.89□□□□□ -0.03
USP28-208ENST00000540438 CCDC28AQ8IWP9 274 aa14.89□□□□□ -0.03
USP28-208ENST00000540438 SLC22A24Q8N4F4 322 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms