RNA–Protein interactions for RNA: ENST00000534442.5

ECHDC1-223, Transcript of ethylmalonyl-CoA decarboxylase 1, human

TSL 5

Gene ECHDC1, Length 577 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC1-223	ENST00000534442	SPIB	Q01892	262 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	RELA	Q04206	551 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	PPID	Q08752	370 aa	Known RBP	3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	BST1	Q10588	318 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	LTB4R	Q15722	352 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	ZNF791	Q3KP31	576 aa	Predicted RBP	3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	NHLRC3	Q5JS37	347 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	ATAD3B	Q5T9A4	648 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	TMUB2	Q71RG4	321 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	WDFY1	Q8IWB7	410 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	TMEM86B	Q8N661	226 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	DEFB108B	Q8NET1	73 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	OR5L2	Q8NGL0	311 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	OR2A1	Q8NGT9	310 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	RFESD	Q8TAC1	157 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	PNPT1	Q8TCS8	783 aa	Known RBP	3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	SPRYD4	Q8WW59	207 aa	Predicted RBP	3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	ITLN1	Q8WWA0	313 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	RPL3L	Q92901	407 aa	Known RBP	3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	TRIM15	Q9C019	465 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	TRABD	Q9H4I3	376 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	RNF122	Q9H9V4	155 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	SMPD3	Q9NY59	655 aa	Predicted RBP	3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	ZMAT5	Q9UDW3	170 aa	Known RBP	3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	ANAPC7	Q9UJX3	599 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	C15orf41	Q9Y2V0	281 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	SIGLEC9	Q9Y336	463 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	MOB4	Q9Y3A3	225 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	OR10H1	Q9Y4A9	318 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	MAB21L2	Q9Y586	359 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	CHCHD2	Q9Y6H1	151 aa	Predicted RBP	3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	SMAD5-AS1	Q9Y6J3	95 aa		3.36	□□□□□ -1.87
ECHDC1-223	ENST00000534442	FAT3	Q8TDW7	4589 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	GOLGA8Q	A0A0J9YX86	632 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	GOLGA8O	A6NCC3	632 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	GOLGA8N	F8WBI6	632 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	GOLGA8R	I6L899	631 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	STX7	O15400	261 aa	Known RBP	3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	MAGEB3	O15480	346 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	POLR2D	O15514	142 aa	Known RBP	3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	RIPK2	O43353	540 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	RAMP3	O60896	148 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	STX11	O75558	287 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	SNX4	O95219	450 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	HLA-DQB2	P05538	268 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	SNRPC	P09234	159 aa	Known RBP	3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	CD28	P10747	220 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	IL32	P24001	234 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	PSMA2	P25787	234 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	BDKRB1	P46663	353 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	STAR	P49675	285 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	EMD	P50402	254 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	GRB7	Q14451	532 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	ATXN7L3	Q14CW9	347 aa	Predicted RBP	3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	GUSBP1	Q15486	140 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	PIGG	Q5H8A4	983 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	CFAP157	Q5JU67	520 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	SPATA46	Q5T0L3	261 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	UNQ9370/PRO34162	Q6UXP9	181 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	SSX8	Q7RTT4	187 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	FAM71A	Q8IYT1	594 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	MCOLN2	Q8IZK6	566 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	RNF10	Q8N5U6	811 aa	Known RBP	3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	FAM83F	Q8NEG4	500 aa	Predicted RBP	3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	OR6T1	Q8NGN1	323 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	OR6K3	Q8NGY3	331 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	OR8K3	Q8NH51	312 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	COPS8	Q99627	209 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	POTEKP	Q9BYX7	375 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	RAB1B	Q9H0U4	201 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	INPP5E	Q9NRR6	644 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	GALP	Q9UBC7	116 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	PCYOX1	Q9UHG3	505 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	MRPS7	Q9Y2R9	242 aa	Known RBP	3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	NAALAD2	Q9Y3Q0	740 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	GMPPB	Q9Y5P6	360 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	PRSS21	Q9Y6M0	314 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	ARHGAP32	A7KAX9	2087 aa		3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442	HEATR1	Q9H583	2144 aa	Known RBP	3.35	□□□□□ -1.87
ECHDC1-223	ENST00000534442		A0A0U1RQV1	116 aa		3.34	□□□□□ -1.87
ECHDC1-223	ENST00000534442	ZNF860	A6NHJ4	632 aa		3.34	□□□□□ -1.87
ECHDC1-223	ENST00000534442	ZNF487	B1APH4	448 aa		3.34	□□□□□ -1.87
ECHDC1-223	ENST00000534442	CHST10	O43529	356 aa		3.34	□□□□□ -1.87
ECHDC1-223	ENST00000534442	GALR3	O60755	368 aa	Predicted RBP	3.34	□□□□□ -1.87
ECHDC1-223	ENST00000534442	SRP72	O76094	671 aa	Known RBP	3.34	□□□□□ -1.87
ECHDC1-223	ENST00000534442	LRAT	O95237	230 aa		3.34	□□□□□ -1.87
ECHDC1-223	ENST00000534442	IGHV3-13	P01766	116 aa		3.34	□□□□□ -1.87
ECHDC1-223	ENST00000534442	UMPS	P11172	480 aa		3.34	□□□□□ -1.87
ECHDC1-223	ENST00000534442	H2AFX	P16104	143 aa	Predicted RBP	3.34	□□□□□ -1.87
ECHDC1-223	ENST00000534442	ZNF708	P17019	499 aa		3.34	□□□□□ -1.87
ECHDC1-223	ENST00000534442	SDC1	P18827	310 aa		3.34	□□□□□ -1.87
ECHDC1-223	ENST00000534442	LHX2	P50458	406 aa		3.34	□□□□□ -1.87
ECHDC1-223	ENST00000534442	PPT1	P50897	306 aa		3.34	□□□□□ -1.87
ECHDC1-223	ENST00000534442	IDH3G	P51553	393 aa	Predicted RBP	3.34	□□□□□ -1.87
ECHDC1-223	ENST00000534442	PLA2G16	P53816	162 aa		3.34	□□□□□ -1.87
ECHDC1-223	ENST00000534442	CLDN18	P56856	261 aa		3.34	□□□□□ -1.87
ECHDC1-223	ENST00000534442	SKP1	P63208	163 aa		3.34	□□□□□ -1.87
ECHDC1-223	ENST00000534442	CBX1	P83916	185 aa		3.34	□□□□□ -1.87
ECHDC1-223	ENST00000534442	MS4A2	Q01362	244 aa		3.34	□□□□□ -1.87
ECHDC1-223	ENST00000534442	EWSR1	Q01844	656 aa	Known RBP eCLIP	3.34	□□□□□ -1.87

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