RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 ISG15P05161 165 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 LCKP06239 509 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 SMIM18P0DKX4 95 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 COX6B1P14854 86 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 ATP6V1B1P15313 513 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 GALP22466 123 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 CRYGSP22914 178 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 PCSK6P29122 969 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 APLNRP35414 380 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 RAD52P43351 418 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 RGS6P49758 472 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 GDI2P50395 445 aaKnown RBP6.4□□□□□ -1.38
CD44-228ENST00000528455 GALK2Q01415 458 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 TFF3Q07654 80 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 ALKBH1Q13686 389 aaKnown RBP6.4□□□□□ -1.38
CD44-228ENST00000528455 RAB39AQ14964 217 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 TRAM1Q15629 374 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 TSC22D1Q15714 1073 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 TAB1Q15750 504 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 TIGD6Q17RP2 521 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 TP53I3Q53FA7 332 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 ARMCX4Q5H9R4 360 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 STEAP3Q658P3 488 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 DMKNQ6E0U4 476 aaPredicted RBP6.4□□□□□ -1.38
CD44-228ENST00000528455 LRRN1Q6UXK5 716 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 ZNF704Q6ZNC4 412 aaPredicted RBP6.4□□□□□ -1.38
CD44-228ENST00000528455 ZNF367Q7RTV3 350 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 MDP1Q86V88 176 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 KLBQ86Z14 1044 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 ZNF584Q8IVC4 421 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 MS4A15Q8N5U1 240 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 RFLNBQ8N5W9 214 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 OR52H1Q8NGJ2 320 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 OR5L1Q8NGL2 311 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 AKR7LQ8NHP1 331 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 RPS4Y2Q8TD47 263 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 FBXW5Q969U6 566 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 MUL1Q969V5 352 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 C4orf45Q96LM5 186 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 WFIKKN1Q96NZ8 548 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 C1QTNF5Q9BXJ0 243 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 TBCCD1Q9NVR7 557 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 NDUFA13Q9P0J0 144 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 EIF3KQ9UBQ5 218 aaKnown RBP6.4□□□□□ -1.38
CD44-228ENST00000528455 R4GMQ9 66 aa6.4□□□□□ -1.38
CD44-228ENST00000528455 PKDREJQ9NTG1 2253 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 TRBV2A0A0J9YWF9 115 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 A0A0U1RQV5 110 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 NKX2-6A6NCS4 301 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 TMEM212A6NML5 194 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 E9PI62 339 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 M0R135 149 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 CCRL2O00421 344 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 CASKO14936 926 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 GPRIN2O60269 458 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 DOK2O60496 412 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 RPP14O95059 124 aaKnown RBP6.39□□□□□ -1.39
CD44-228ENST00000528455 LALBAP00709 142 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 ACSM4P0C7M7 580 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 ZNF35P13682 527 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 ZNF12P17014 697 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 CELP19835 753 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 PTAFRP25105 342 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 PSMA1P25786 263 aaKnown RBP6.39□□□□□ -1.39
CD44-228ENST00000528455 APEX1P27695 318 aaKnown RBP6.39□□□□□ -1.39
CD44-228ENST00000528455 HTR5AP47898 357 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 PRKXP51817 358 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 GTF2A1P52655 376 aaPredicted RBP6.39□□□□□ -1.39
CD44-228ENST00000528455 UCP2P55851 309 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 TUBA1BP68363 451 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 BLMHQ13867 455 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 CDSNQ15517 529 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 NEDD8Q15843 81 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 TBC1D28Q2M2D7 210 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 ZNF829Q3KNS6 432 aaPredicted RBP6.39□□□□□ -1.39
CD44-228ENST00000528455 TMEM244Q5VVB8 128 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 TMEM108Q6UXF1 575 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 GDPGP1Q6ZNW5 385 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 TUBA1AQ71U36 451 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 PRSS45Q7RTY3 260 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 NAA40Q86UY6 237 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 CATSPERDQ86XM0 798 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 PHC2Q8IXK0 858 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 ELMOD2Q8IZ81 293 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 ZNF283Q8N7M2 679 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 CCDC54Q8NEL0 328 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 SLC30A7Q8NEW0 376 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 OR2G2Q8NGZ5 317 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 GHSRQ92847 366 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 NINJ1Q92982 152 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 ZNF799Q96GE5 643 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 RADILQ96JH8 1075 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 DACH2Q96NX9 599 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 MOB1AQ9H8S9 216 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 G6PC2Q9NQR9 355 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 BATF3Q9NR55 127 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 FAM206AQ9NX38 181 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 NUFIP1Q9UHK0 495 aaKnown RBP6.39□□□□□ -1.39
CD44-228ENST00000528455 ST6GALNAC2Q9UJ37 374 aa6.39□□□□□ -1.39
CD44-228ENST00000528455 ZNF391Q9UJN7 358 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms