RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 RBPMSQ93062 196 aaKnown RBP2.82□□□□□ -1.96
CD44-217ENST00000525348 ESAMQ96AP7 390 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 TMEM45BQ96B21 275 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 C12orf43Q96C57 262 aaKnown RBP2.82□□□□□ -1.96
CD44-217ENST00000525348 NUS1Q96E22 293 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 ZBED6CLQ96FA7 236 aaPredicted RBP2.82□□□□□ -1.96
CD44-217ENST00000525348 CMTM7Q96FZ5 175 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 HSFY1Q96LI6 401 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 LINC00052Q96N35 136 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 OR2V2Q96R30 315 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 OR52B2Q96RD2 323 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 STACQ99469 402 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 MED10Q9BTT4 135 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 CCDC90BQ9GZT6 254 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 RPF2Q9H7B2 306 aaKnown RBP2.82□□□□□ -1.96
CD44-217ENST00000525348 ZNF160Q9HCG1 818 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 OR2S2Q9NQN1 319 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 CHRAC1Q9NRG0 131 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 C14orf105Q9NVL8 296 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 MED9Q9NWA0 146 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 IL17CQ9P0M4 197 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 GSKIPQ9P0R6 139 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 COPZ2Q9P299 210 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 CD84Q9UIB8 345 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 SLC7A11Q9UPY5 501 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 TSSC4Q9Y5U2 329 aaPredicted RBP2.82□□□□□ -1.96
CD44-217ENST00000525348 CNTNAP1P78357 1384 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 OVOS2A0A0G2JMS6 1433 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 OVOS2A0A0J9YW53 1432 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 TECPR2O15040 1411 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 OVOS2Q6IE36 1432 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 NOTCH2Q04721 2471 aa2.82□□□□□ -1.96
CD44-217ENST00000525348 TRBV2A0A0J9YWF9 115 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 TUBAL3A6NHL2 446 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 FAM74A7A6NL05 159 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 ZNF99A8MXY4 864 aaPredicted RBP2.81□□□□□ -1.96
CD44-217ENST00000525348 RNASEK-C17orf49H0YIS7 233 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 SGK494L7N484 410 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 M0QXV9 152 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 CXCR6O00574 342 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 IMPA2O14732 288 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 RTL8CO15255 209 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 ZNF208O43345 1280 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 PPIHO43447 177 aaKnown RBP2.81□□□□□ -1.96
CD44-217ENST00000525348 FKBP6O75344 327 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 RP2O75695 350 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 ANXA9O76027 345 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 GADD45GO95257 159 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 CLDN9O95484 217 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 TTC4O95801 387 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 TSPAN13O95857 204 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 TSPAN12O95859 305 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 C6orf47O95873 294 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 CST4P01036 141 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 IFNA21P01568 189 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 IL7P13232 177 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 NPR2P20594 1047 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 SERPINA2P20848 420 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 IFNGR2P38484 337 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 PTGFRP43088 359 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 MAGEA3P43357 314 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 LGALS7P47929 136 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 IDH2P48735 452 aaKnown RBP2.81□□□□□ -1.96
CD44-217ENST00000525348 CYB561P49447 251 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 TDGF1P3P51864 188 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 VSX2P58304 361 aaPredicted RBP2.81□□□□□ -1.96
CD44-217ENST00000525348 CDC42P60953 191 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 PKIAP61925 76 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 SELENOTP62341 195 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 CHRNB3Q05901 458 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 ARHGAP1Q07960 439 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 MEF2DQ14814 521 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 ANKRD55Q3KP44 614 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 PARP15Q460N3 678 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 CDNFQ49AH0 187 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 COX19Q49B96 90 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 FAM74A3Q4VXF1 159 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 SFT2D3Q587I9 215 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 TMEM41BQ5BJD5 291 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 OLFML2AQ68BL7 652 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 KDM4DQ6B0I6 523 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 LAMTOR1Q6IAA8 161 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 ZNF544Q6NX49 715 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 SLC39A4Q6P5W5 647 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 ZNF836Q6ZNA1 936 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 ABHD13Q7L211 337 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 ZNF546Q86UE3 836 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 SLC22A16Q86VW1 577 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 FUNDC1Q8IVP5 155 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 UBQLNLQ8IYU4 475 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 PGAM4Q8N0Y7 254 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 GTPBP8Q8N3Z3 284 aaPredicted RBP2.81□□□□□ -1.96
CD44-217ENST00000525348 MMGT1Q8N4V1 131 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 DHRSXQ8N5I4 330 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 C12orf45Q8N5I9 185 aaPredicted RBP2.81□□□□□ -1.96
CD44-217ENST00000525348 NECAB1Q8N987 351 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 FBXL13Q8NEE6 735 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 OR13D1Q8NGV5 346 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 OR10K1Q8NGX5 313 aa2.81□□□□□ -1.96
CD44-217ENST00000525348 RHEBL1Q8TAI7 183 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms