RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 SMIM19Q96E16 107 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 PGAM5Q96HS1 289 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 PDCD1LG2Q9BQ51 273 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 BCL2L14Q9BZR8 327 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 ZNF442Q9H7R0 627 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 FZR1Q9UM11 496 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 N6AMT1Q9Y5N5 214 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 CSMD2Q7Z408 3487 aa13.15□□□□□ -0.3
LSM1-203ENST00000520755 AKAP6Q13023 2319 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 TACC2O95359 2948 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 A0A1B0GTI1 187 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 ACOD1A6NK06 481 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 CYSRT1A8MQ03 144 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 VSTM5A8MXK1 200 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 J3QW42 95 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 TBX1O43435 398 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 TFAP2AP05549 437 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 DANCRP0C864 163 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 HSMCR30P0CW71 290 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 PSMB9P28065 219 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 SERPINF1P36955 418 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 TGFBR2P37173 567 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 LIPAP38571 399 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 ALDH3B2P48448 385 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 PPP1CBP62140 327 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 ZNF92Q03936 586 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 TPBGQ13641 420 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 TSTQ16762 297 aaKnown RBP13.14□□□□□ -0.31
LSM1-203ENST00000520755 ODF4Q2M2E3 257 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 ARMCX4Q5H9R4 360 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 SPATA46Q5T0L3 261 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 AGAP6Q5VW22 663 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 UNQ6126/PRO20091Q6UXV3 157 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 OR52H1Q8NGJ2 320 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 OR13C5Q8NGS8 318 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 HAVCR2Q8TDQ0 301 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 SPSB4Q96A44 273 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 PTTG3PQ9NZH4 202 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 EDARQ9UNE0 448 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 CMAHPQ9Y471 501 aa13.14□□□□□ -0.31
LSM1-203ENST00000520755 CHD3Q12873 2000 aaKnown RBP13.13□□□□□ -0.31
LSM1-203ENST00000520755 TRBV2A0A0J9YWF9 115 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 A0A0U1RQV5 110 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 hCG_38984A0A1B0GV85 526 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 P2RY10O00398 339 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 PLPP2O43688 288 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 ATE1O95260 518 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 CLPTM1O96005 669 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 CPEP16870 476 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 CELP19835 753 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 CCL1P22362 96 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 DNASE1P24855 282 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 SLC3A1Q07837 685 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 TNK1Q13470 666 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 GK2Q14410 553 aaPredicted RBP13.13□□□□□ -0.31
LSM1-203ENST00000520755 HLXQ14774 488 aaPredicted RBP13.13□□□□□ -0.31
LSM1-203ENST00000520755 GFOD2Q3B7J2 385 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 LIPKQ5VXJ0 399 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 PHC2Q8IXK0 858 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 RDH10Q8IZV5 341 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 OR51A4Q8NGJ6 313 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 SLC25A40Q8TBP6 338 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 OR51E1Q8TCB6 317 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 SGK3Q96BR1 496 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 MARS2Q96GW9 593 aaKnown RBP13.13□□□□□ -0.31
LSM1-203ENST00000520755 SYT3Q9BQG1 590 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 TRAF4Q9BUZ4 470 aaPredicted RBP13.13□□□□□ -0.31
LSM1-203ENST00000520755 OR2J1Q9GZK6 312 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 OR10A2Q9H208 303 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 PLK3Q9H4B4 646 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 CBLN4Q9NTU7 201 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 DUSP13Q9UII6 198 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 SF3B6Q9Y3B4 125 aaKnown RBP13.13□□□□□ -0.31
LSM1-203ENST00000520755 ARFGEF3Q5TH69 2177 aa13.13□□□□□ -0.31
LSM1-203ENST00000520755 ITPR2Q14571 2701 aa13.12□□□□□ -0.31
LSM1-203ENST00000520755 SETXQ7Z333 2677 aaKnown RBP13.12□□□□□ -0.31
LSM1-203ENST00000520755 LOC107986453A0A1B0GWG9 222 aa13.12□□□□□ -0.31
LSM1-203ENST00000520755 TMEM212A6NML5 194 aa13.12□□□□□ -0.31
LSM1-203ENST00000520755 H3BSH0 61 aa13.12□□□□□ -0.31
LSM1-203ENST00000520755 CD8AP01732 235 aa13.12□□□□□ -0.31
LSM1-203ENST00000520755 CD53P19397 219 aa13.12□□□□□ -0.31
LSM1-203ENST00000520755 MPV17P39210 176 aa13.12□□□□□ -0.31
LSM1-203ENST00000520755 RPS11P62280 158 aaKnown RBP eCLIP13.12□□□□□ -0.31
LSM1-203ENST00000520755 RPS25P62851 125 aaKnown RBP13.12□□□□□ -0.31
LSM1-203ENST00000520755 Q6ZSR3 168 aa13.12□□□□□ -0.31
LSM1-203ENST00000520755 DTX2Q86UW9 622 aa13.12□□□□□ -0.31
LSM1-203ENST00000520755 LRP11Q86VZ4 500 aa13.12□□□□□ -0.31
LSM1-203ENST00000520755 PLPP7Q8NBV4 271 aa13.12□□□□□ -0.31
LSM1-203ENST00000520755 UFD1Q92890 307 aa13.12□□□□□ -0.31
LSM1-203ENST00000520755 MRPL24Q96A35 216 aaKnown RBP13.12□□□□□ -0.31
LSM1-203ENST00000520755 TMIGD2Q96BF3 282 aa13.12□□□□□ -0.31
LSM1-203ENST00000520755 REEP6Q96HR9 211 aa13.12□□□□□ -0.31
LSM1-203ENST00000520755 MRPL37Q9BZE1 423 aaKnown RBP13.12□□□□□ -0.31
LSM1-203ENST00000520755 GPR84Q9NQS5 396 aa13.12□□□□□ -0.31
LSM1-203ENST00000520755 NDUFB11Q9NX14 153 aa13.12□□□□□ -0.31
LSM1-203ENST00000520755 ANKRD17O75179 2603 aaKnown RBP13.12□□□□□ -0.31
LSM1-203ENST00000520755 A0A1W2PPW3 197 aa13.11□□□□□ -0.31
LSM1-203ENST00000520755 B9A039 149 aa13.11□□□□□ -0.31
LSM1-203ENST00000520755 XRCC2O43543 280 aa13.11□□□□□ -0.31
LSM1-203ENST00000520755 LMX1BO60663 402 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms