RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 RIMS3Q9UJD0 308 aa5.89□□□□□ -1.47
SDCBP-208ENST00000520228 MYO9AB2RTY4 2548 aa5.89□□□□□ -1.47
SDCBP-208ENST00000520228 LOC102725191A0A1B0GVB3 256 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 CIB4A0PJX0 185 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 OR6C65A6NJZ3 312 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 DEFB108AA8MXU0 73 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 LRRN3E7EW58 273 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 KPNA4O00629 521 aaPredicted RBP5.88□□□□□ -1.47
SDCBP-208ENST00000520228 PLPP3O14495 311 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 LYZL6O75951 148 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 KRT33AO76009 404 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 OR6A2O95222 327 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 MT-ATP6P00846 226 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 BGLAPP02818 100 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 PRSS1P07477 247 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 THRBP10828 461 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 HSD17B1P14061 328 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 TCN1P20061 433 aaPredicted RBP5.88□□□□□ -1.47
SDCBP-208ENST00000520228 CRYGSP22914 178 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 IGHV1-2P23083 117 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 CPT2P23786 658 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 MC5RP33032 325 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 RBM34P42696 430 aaKnown RBP5.88□□□□□ -1.47
SDCBP-208ENST00000520228 TGFBR3Q03167 851 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 ST3GAL3Q11203 375 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 STK11Q15831 433 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 IFI44LQ53G44 452 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 TSPO2Q5TGU0 170 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 GLYATQ6IB77 296 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 RBMS3Q6XE24 437 aaKnown RBP5.88□□□□□ -1.47
SDCBP-208ENST00000520228 ZNF554Q86TJ5 538 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 P2RY8Q86VZ1 359 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 DEFB107AQ8IZN7 70 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 ZNF433Q8N7K0 673 aaPredicted RBP5.88□□□□□ -1.47
SDCBP-208ENST00000520228 STPG4Q8N801 248 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 GEMIN6Q8WXD5 167 aaKnown RBP5.88□□□□□ -1.47
SDCBP-208ENST00000520228 HIST1H2ACQ93077 130 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 PIK3IP1Q96FE7 263 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 PRSS27Q9BQR3 290 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 ZNF426Q9BUY5 554 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 KRTAP2-2Q9BYT5 123 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 Q9N2K0 584 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 NANSQ9NR45 359 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 SLC7A10Q9NS82 523 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 MRPL39Q9NYK5 338 aaKnown RBP5.88□□□□□ -1.47
SDCBP-208ENST00000520228 TAS2R16Q9NYV7 291 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 NBPF19A0A087WUL8 3843 aa5.88□□□□□ -1.47
SDCBP-208ENST00000520228 KIAA1549Q9HCM3 1950 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 OR5H1A6NKK0 313 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 SMIM1B2RUZ4 78 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 RAD51DO75771 328 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 HPRP00739 348 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 MT-ND1P03886 318 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 ADORA3P0DMS8 318 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 UMPSP11172 480 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 COX5AP20674 150 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 CALB2P22676 271 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 AHCYP23526 432 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 YAP1P46937 504 aaKnown RBP5.87□□□□□ -1.47
SDCBP-208ENST00000520228 CLDN17P56750 224 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 LGALS3BPQ08380 585 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 PUDPQ08623 228 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 TAB1Q15750 504 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 ZNF74Q16587 644 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 VWC2Q2TAL6 325 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 MS4A18Q3C1V0 323 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 BEX5Q5H9J7 111 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 TIMM23BQ5SRD1 257 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 C9orf135Q5VTT2 229 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 NIPAL3Q6P499 406 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 SSX8Q7RTT4 187 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 ABHD12BQ7Z5M8 362 aaPredicted RBP5.87□□□□□ -1.47
SDCBP-208ENST00000520228 CYP4Z1Q86W10 505 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 NKAIN4Q8IVV8 208 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 LRRC17Q8N6Y2 441 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 ZBTB8BQ8NAP8 495 aaPredicted RBP5.87□□□□□ -1.47
SDCBP-208ENST00000520228 OR10V1Q8NGI7 309 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 OR5J2Q8NH18 312 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 TMEM239Q8WW34 195 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 NRGNQ92686 78 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 MUCL1Q96DR8 90 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 SGTBQ96EQ0 304 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 PRRC1Q96M27 445 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 GORASP2Q9H8Y8 452 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 NGBQ9NPG2 151 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 MEPEQ9NQ76 525 aaPredicted RBP5.87□□□□□ -1.47
SDCBP-208ENST00000520228 DCAF13Q9NV06 445 aaKnown RBP5.87□□□□□ -1.47
SDCBP-208ENST00000520228 CD300AQ9UGN4 299 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 ZNF229Q9UJW7 825 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 SAMD4AQ9UPU9 718 aaKnown RBP5.87□□□□□ -1.47
SDCBP-208ENST00000520228 TCF19Q9Y242 345 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 MED31Q9Y3C7 131 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 FAM32AQ9Y421 112 aaKnown RBP5.87□□□□□ -1.47
SDCBP-208ENST00000520228 ENPP4Q9Y6X5 453 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 PHF3Q92576 2039 aaKnown RBP5.87□□□□□ -1.47
SDCBP-208ENST00000520228 CREBBPQ92793 2442 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 SPG11Q96JI7 2443 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 CCDC168Q8NDH2 2452 aa5.87□□□□□ -1.47
SDCBP-208ENST00000520228 FREM3P0C091 2139 aa5.86□□□□□ -1.47
SDCBP-208ENST00000520228 HTR3EA5X5Y0 456 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms