RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 COL22A1Q8NFW1 1626 aaPredicted RBP12.05□□□□□ -0.48
TCOF1-214ENST00000515035 CLDN34H7C241 214 aa12.05□□□□□ -0.48
TCOF1-214ENST00000515035 CST4P01036 141 aa12.05□□□□□ -0.48
TCOF1-214ENST00000515035 CXCL10P02778 98 aa12.05□□□□□ -0.48
TCOF1-214ENST00000515035 WNT1P04628 370 aa12.05□□□□□ -0.48
TCOF1-214ENST00000515035 SUB1P53999 127 aaKnown RBP eCLIP12.05□□□□□ -0.48
TCOF1-214ENST00000515035 RAC1P63000 192 aa12.05□□□□□ -0.48
TCOF1-214ENST00000515035 SPNS2Q8IVW8 549 aa12.05□□□□□ -0.48
TCOF1-214ENST00000515035 TINAGL1Q9GZM7 467 aaPredicted RBP12.05□□□□□ -0.48
TCOF1-214ENST00000515035 CACNA1SQ13698 1873 aa12.05□□□□□ -0.48
TCOF1-214ENST00000515035 DBX1A6NMT0 343 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 H3BP45 60 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 RAG2P55895 527 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 GPR32P1Q8NGA4 272 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 RDH5Q92781 318 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 TRAPPC1Q9Y5R8 145 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 LOC102723971A0A1B0GUV8 181 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 SERTM2A0A1B0GWG4 89 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 CST7O76096 145 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 KCNJ3P48549 501 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 SMAD4Q13485 552 aaKnown RBP12.04□□□□□ -0.48
TCOF1-214ENST00000515035 SLC38A6Q8IZM9 456 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 RCL1Q9Y2P8 373 aaKnown RBP12.04□□□□□ -0.48
TCOF1-214ENST00000515035 N4BP2Q86UW6 1770 aaPredicted RBP12.04□□□□□ -0.48
TCOF1-214ENST00000515035 SLC25A6P12236 298 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 RPL13AP40429 203 aaKnown RBP12.04□□□□□ -0.48
TCOF1-214ENST00000515035 OTUD1Q5VV17 481 aaPredicted RBP12.04□□□□□ -0.48
TCOF1-214ENST00000515035 OR4S1Q8NGB4 309 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 SLC25A43Q8WUT9 341 aaPredicted RBP12.04□□□□□ -0.48
TCOF1-214ENST00000515035 ATOH1Q92858 354 aaPredicted RBP12.04□□□□□ -0.48
TCOF1-214ENST00000515035 PRRX2Q99811 253 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 TRAF4Q9BUZ4 470 aaPredicted RBP12.04□□□□□ -0.48
TCOF1-214ENST00000515035 R4GMQ9 66 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 ATF1P18846 271 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 UBE3DQ7Z6J8 389 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 A0A1B0GTL3 188 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 CSN1S1P47710 185 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 CSNK1EP49674 416 aaKnown RBP12.04□□□□□ -0.48
TCOF1-214ENST00000515035 LHX8Q68G74 356 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 OR2A2Q6IF42 318 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 PRR27Q6MZM9 219 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 ARRDC1Q8N5I2 433 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 SIRT6Q8N6T7 355 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 CCDC74BQ96LY2 380 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 ASB16Q96NS5 453 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 MARVELD1Q9BSK0 173 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 ADGRL4Q9HBW9 690 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 LIN7CQ9NUP9 197 aaKnown RBP12.04□□□□□ -0.48
TCOF1-214ENST00000515035 OR5V1Q9UGF6 321 aa12.04□□□□□ -0.48
TCOF1-214ENST00000515035 ING1Q9UK53 422 aaPredicted RBP12.04□□□□□ -0.48
TCOF1-214ENST00000515035 TARM1B6A8C7 271 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 SLC17A2O00624 439 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 OR5G3P0C626 314 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 ICAM2P13598 275 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 MANEAQ5SRI9 462 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 DND1Q8IYX4 353 aaKnown RBP12.03□□□□□ -0.48
TCOF1-214ENST00000515035 C11orf42Q8N5U0 333 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 OR6S1Q8NH40 331 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 MS4A10Q96PG2 267 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 CIB3Q96Q77 187 aaPredicted RBP12.03□□□□□ -0.48
TCOF1-214ENST00000515035 TRAV34A0A0B4J273 112 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 A0A1W2PNV4 684 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 FZD6O60353 706 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 CST2P09228 141 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 ZNF17P17021 662 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 APOBEC1P41238 236 aaKnown RBP12.03□□□□□ -0.48
TCOF1-214ENST00000515035 HIST1H3AP68431 136 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 PLA1AQ53H76 456 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 DTWD2Q8NBA8 298 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 TJP1Q07157 1748 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 C4orf47A7E2U8 309 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 M0R135 149 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 ARPC3O15145 178 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 PTHLHP12272 177 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 CD46P15529 392 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 CCKARP32238 428 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 OR8B8Q15620 311 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 C21orf62-AS1Q17RA5 79 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 TMEM183BQ1AE95 376 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 DGAT2L6Q6ZPD8 337 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 HSD17B13Q7Z5P4 300 aaPredicted RBP12.03□□□□□ -0.48
TCOF1-214ENST00000515035 OR10G3Q8NGC4 313 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 OR52N5Q8NH56 324 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 ZNF799Q96GE5 643 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 ST6GAL2Q96JF0 529 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 LINC00052Q96N35 136 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 ZDHHC5Q9C0B5 715 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 FGF21Q9NSA1 209 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 OR2J2O76002 312 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 IL3RAP26951 378 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 DHODHQ02127 395 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 ETFDHQ16134 617 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 CDONQ4KMG0 1287 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 METRNLQ641Q3 311 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 DRAM2Q6UX65 266 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 FBXO34Q9NWN3 711 aa12.03□□□□□ -0.48
TCOF1-214ENST00000515035 CRYBB2P43320 205 aa12.02□□□□□ -0.48
TCOF1-214ENST00000515035 MUC20Q8N307 709 aaPredicted RBP12.02□□□□□ -0.48
TCOF1-214ENST00000515035 H1FXQ92522 213 aaKnown RBP12.02□□□□□ -0.48
TCOF1-214ENST00000515035 DPF1Q92782 380 aa12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms