RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 SMAD7O15105 426 aaKnown RBP6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 F13BP05160 661 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 PATE4P0C8F1 98 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 OR8G3PP0DMU2 310 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 DTYMKP23919 212 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 STOMP27105 288 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 MSX1P28360 303 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 RAB5CP51148 216 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 TAS2R41P59536 307 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 IL18Q14116 193 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 SYT14P1Q58G82 188 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 C6orf141Q5SZD1 244 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 ZNF324BQ6AW86 544 aaPredicted RBP6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 NUFIP2Q7Z417 695 aaKnown RBP6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 MSRB3Q8IXL7 192 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 SVBPQ8N300 66 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 SEMA6DQ8NFY4 1073 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 OR2T12Q8NG77 320 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 TERB2Q8NHR7 220 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 LRRC58Q96CX6 371 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 OR14A2Q96R54 314 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 S100A13Q99584 98 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 RPS10P5Q9NQ39 176 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 PRSS50Q9UI38 385 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 TMED7Q9Y3B3 224 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 BCKDKO14874 412 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 DOK2O60496 412 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 CA11O75493 328 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 CH25HO95992 272 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 IGF2P01344 180 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 MT-ND2P03891 347 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 SAGP10523 405 aaPredicted RBP6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 PRKACGP22612 351 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 PRKXP51817 358 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 RIPPLY3P57055 190 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 EMX1Q04741 257 aaPredicted RBP6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 KEAP1Q14145 624 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 MELKQ14680 651 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 HIKESHIQ53FT3 197 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 LRIF1Q5T3J3 769 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 NCR3LG1Q68D85 454 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 SEM1Q6ZVN7 128 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 FCRLAQ7L513 359 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 BBS1Q8NFJ9 593 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 PSMG3-AS1Q96PY0 264 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 POLDIP3Q9BY77 421 aaKnown RBP6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 SRA1Q9HD15 236 aaKnown RBP6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 OSGIN1Q9UJX0 560 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 PROCRQ9UNN8 238 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 NUBP2Q9Y5Y2 271 aa6.98□□□□□ -1.29
LIMCH1-219ENST00000514096 ANXA2P2A6NMY6 339 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 CNIH1O95406 144 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 THRBP10828 461 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 ARSBP15848 533 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 TBXA2RP21731 343 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 NFYBP25208 207 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 LHX2P50458 406 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 ZNF83P51522 516 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 MVKQ03426 396 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 PABPC1L2AQ5JQF8 200 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 LIPKQ5VXJ0 399 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 SAXO2Q658L1 398 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 REEP3Q6NUK4 255 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 OR5W2Q8NH69 310 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 OR2V1Q8NHB1 315 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 LMF2Q9BU23 707 aaKnown RBP6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 UBQLN3Q9H347 655 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 MTHFD2LQ9H903 347 aaPredicted RBP6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 FKRPQ9H9S5 495 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 KLHL21Q9UJP4 597 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 ZNF443Q9Y2A4 671 aaPredicted RBP6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 RPS10-NUDT3A0A1W2PQS6 291 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 A0A1W2PRV1 198 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 ZNF814B7Z6K7 855 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 K7EPK0 472 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 ABCD4O14678 606 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 GLSO94925 669 aaPredicted RBP6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 IL1AP01583 271 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 SNRNP70P08621 437 aaKnown RBP6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 MMP7P09237 267 aaPredicted RBP6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 SLC2A2P11168 524 aaPredicted RBP6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 RPS10P46783 165 aaKnown RBP6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 HNRNPA0Q13151 305 aaKnown RBP6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 VMACQ2NL98 169 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 PLPPR5Q32ZL2 321 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 IZUMO1Q8IYV9 350 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 FAM71E2Q8N5Q1 922 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 ZNF283Q8N7M2 679 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 POMGNT2Q8NAT1 580 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 DYNC2LI1Q8TCX1 351 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 TMEM234Q8WY98 164 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 CENPNQ96H22 339 aaPredicted RBP6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 RBP7Q96R05 134 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 ZNF607Q96SK3 696 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 TMEM27Q9HBJ8 222 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 TCF7L1Q9HCS4 588 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 DNAJC4Q9NNZ3 241 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 GAR1Q9NY12 217 aaKnown RBP6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 EMC9Q9Y3B6 208 aa6.97□□□□□ -1.29
LIMCH1-219ENST00000514096 H7C1C5 153 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms