RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 ZNF230Q9UIE0 474 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 IGHV5-51A0A0C4DH38 117 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 RAB19A4D1S5 217 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 MSTNO14793 375 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 ST8SIA3O43173 380 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 OIP5O43482 229 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 DUS4LO95620 317 aaKnown RBP7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 OPRM1P35372 400 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 GAS1P54826 345 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 RNF4P78317 190 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 FZD2Q14332 565 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 UNQ9370/PRO34162Q6UXP9 181 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 PRR18Q8N4B5 295 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 SLC38A9Q8NBW4 561 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 OR52H1Q8NGJ2 320 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 OR1N1Q8NGS0 311 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 SLC25A43Q8WUT9 341 aaPredicted RBP7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 UQCC2Q9BRT2 126 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 MYOFQ9NZM1 2061 aa7.54□□□□□ -1.2
LIMCH1-216ENST00000512820 DCTN6O00399 190 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 PLPP3O14495 311 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 BCAT2O15382 392 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 EIF1BO60739 113 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 CSF2RBP32927 897 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 FUT7Q11130 342 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 SKP2Q13309 424 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 INPP5JQ15735 1006 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 DEGS2Q6QHC5 323 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 CPEB2Q7Z5Q1 589 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 ZNF100Q8IYN0 542 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 CRIPAKQ8N1N5 446 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 HAS2Q92819 552 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 LDAHQ9H6V9 325 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 PILRAQ9UKJ1 303 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 FBXO7Q9Y3I1 522 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 DOCK4Q8N1I0 1966 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 LILRA5A6NI73 299 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 C4orf47A7E2U8 309 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 SHISA8B8ZZ34 492 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 RNASEK-C17orf49H0YIS7 233 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 GPR31O00270 319 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 KIR2DL1P43626 348 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 F2RL1P55085 397 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 PCBD1P61457 104 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 PJVKQ0ZLH3 352 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 PNLIPRP3Q17RR3 467 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 IL34Q6ZMJ4 242 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 SFTPA2Q8IWL1 248 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 MKXQ8IYA7 352 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 WDSUB1Q8N9V3 476 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 SEMA6DQ8NFY4 1073 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 ASB5Q8WWX0 329 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 PAPOLGQ9BWT3 736 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 WASF3Q9UPY6 502 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 CD300LBA8K4G0 201 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 POU2F2P09086 479 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 EFNB1P98172 346 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 ZNF266Q14584 549 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 ZNF684Q5T5D7 378 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 TMEM92Q6UXU6 159 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 AAED1Q7RTV5 226 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 LSRQ86X29 649 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 TMEM217Q8N7C4 229 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 CLEC1AQ8NC01 280 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 PLPP5Q8NEB5 264 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 IL1F10Q8WWZ1 152 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 MS4A3Q96HJ5 214 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 MMP26Q9NRE1 261 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 TSC2P49815 1807 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 TET1Q8NFU7 2136 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 TMEM218A2RU14 115 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 ANKUB1A6NFN9 424 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 OR5H8P0DN80 308 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 CD79AP11912 226 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 FPR2P25090 351 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 KIR3DL2P43630 455 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 DUSP3P51452 185 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 ZP1P60852 638 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 SRPXP78539 464 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 SHHQ15465 462 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 NR0B2Q15466 257 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 TAF9Q16594 264 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 FHL5Q5TD97 284 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 ZNF321PQ8N8H1 164 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 OR5T1Q8NG75 326 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 CPNE4Q96A23 557 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 ARHGAP5-AS1Q96IT6 56 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 ALX4Q9H161 411 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 B4GALT7Q9UBV7 327 aa7.53□□□□□ -1.2
LIMCH1-216ENST00000512820 TRBV5-5A0A0J9YX44 114 aa7.52□□□□□ -1.2
LIMCH1-216ENST00000512820 MFSD2BA6NFX1 497 aa7.52□□□□□ -1.2
LIMCH1-216ENST00000512820 SIGLEC6O43699 453 aa7.52□□□□□ -1.2
LIMCH1-216ENST00000512820 SFT2D2O95562 160 aa7.52□□□□□ -1.2
LIMCH1-216ENST00000512820 HIST1H1DP16402 221 aaKnown RBP7.52□□□□□ -1.2
LIMCH1-216ENST00000512820 AKR1C3P42330 323 aa7.52□□□□□ -1.2
LIMCH1-216ENST00000512820 FASLGP48023 281 aa7.52□□□□□ -1.2
LIMCH1-216ENST00000512820 NHLRC3Q5JS37 347 aa7.52□□□□□ -1.2
LIMCH1-216ENST00000512820 ZNF660Q6AZW8 331 aaPredicted RBP7.52□□□□□ -1.2
LIMCH1-216ENST00000512820 RGS7BPQ6MZT1 257 aaPredicted RBP7.52□□□□□ -1.2
LIMCH1-216ENST00000512820 OVCH2Q7RTZ1 564 aa7.52□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms