RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 CYP24A1Q07973 514 aa2.34□□□□□ -2.03
HMGB1P28-201ENST00000507778 CDC20Q12834 499 aa2.34□□□□□ -2.03
HMGB1P28-201ENST00000507778 PIGHQ14442 188 aaPredicted RBP2.34□□□□□ -2.03
HMGB1P28-201ENST00000507778 GABRA6Q16445 453 aa2.34□□□□□ -2.03
HMGB1P28-201ENST00000507778 CMTM8Q8IZV2 173 aa2.34□□□□□ -2.03
HMGB1P28-201ENST00000507778 FAM184AQ8NB25 1140 aa2.34□□□□□ -2.03
HMGB1P28-201ENST00000507778 OR10W1Q8NGF6 305 aa2.34□□□□□ -2.03
HMGB1P28-201ENST00000507778 CIRBP-AS1Q8TBR5 109 aa2.34□□□□□ -2.03
HMGB1P28-201ENST00000507778 NAT6Q93015 286 aa2.34□□□□□ -2.03
HMGB1P28-201ENST00000507778 TMEM243Q9BU79 118 aa2.34□□□□□ -2.03
HMGB1P28-201ENST00000507778 DEFB129Q9H1M3 183 aa2.34□□□□□ -2.03
HMGB1P28-201ENST00000507778 BLZF1Q9H2G9 400 aa2.34□□□□□ -2.03
HMGB1P28-201ENST00000507778 EXOSC4Q9NPD3 245 aaKnown RBP2.34□□□□□ -2.03
HMGB1P28-201ENST00000507778 PEF1Q9UBV8 284 aaKnown RBP2.34□□□□□ -2.03
HMGB1P28-201ENST00000507778 ZNFX1Q9P2E3 1918 aaKnown RBP2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 COLCA2A8K830 154 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 TAAR5O14804 337 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 CHMP2AO43633 222 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 RAD1O60671 282 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 EIF1BO60739 113 aaKnown RBP2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 MPDU1O75352 247 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 RBBP9O75884 186 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 RCBTB2O95199 551 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 PAHP00439 452 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 TACSTD2P09758 323 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 POLR2IP36954 125 aaKnown RBP2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 MYCNOSP40205 109 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 EIF1P41567 113 aaKnown RBP2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 YWHAEP62258 255 aaKnown RBP2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 PPIDQ08752 370 aaKnown RBP2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 ZNF816Q0VGE8 651 aaPredicted RBP2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 SLC39A6Q13433 755 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 PNOCQ13519 176 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 DOC2AQ14183 400 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 HIKESHIQ53FT3 197 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 RNASE13Q5GAN3 156 aaKnown RBP2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 RTL4Q6ZR62 310 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 ZNF615Q8N8J6 731 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 C19orf18Q8NEA5 215 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 TTLQ8NG68 377 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 OR1J4Q8NGS1 313 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 OR9A2Q8NGT5 310 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 SLC25A46Q96AG3 418 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 RCN3Q96D15 328 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 CERS2Q96G23 380 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 TOLLIPQ9H0E2 274 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 RPRD1BQ9NQG5 326 aaKnown RBP2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 RHBDD3Q9Y3P4 386 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 UBIAD1Q9Y5Z9 338 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 ADGRA3Q8IWK6 1321 aa2.33□□□□□ -2.04
HMGB1P28-201ENST00000507778 IGLV2-18A0A075B6J9 118 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 IGHV7-4-1A0A0J9YVY3 117 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 CENPVL3A0A0U1RRI6 287 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 ZNF850A8MQ14 1090 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 SERPINE3A8MV23 424 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 RRP8O43159 456 aaKnown RBP2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 SLC16A7O60669 478 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 IGHV3-11P01762 117 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 HLA-DQB1P01920 261 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 IL4P05112 153 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 GFAPP14136 432 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 TUBG1P23258 451 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 ME2P23368 584 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 CD70P32970 193 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 PCK1P35558 622 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 DAOAP59103 153 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 SIGLEC14Q08ET2 396 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 WDR43Q15061 677 aaKnown RBP eCLIP2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 C5orf64Q2M2E5 130 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 YIF1BQ5BJH7 314 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 NEGR1Q7Z3B1 354 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 HMGN2P46Q86SG4 172 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 MDP1Q86V88 176 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 KIF2BQ8N4N8 673 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 ZNF561Q8N587 486 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 PROKR2Q8NFJ6 384 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 OR13G1Q8NGZ3 307 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 ASZ1Q8WWH4 475 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 DEDD2Q8WXF8 326 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 RERGQ96A58 199 aaPredicted RBP2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 ISOC2Q96AB3 205 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 AGMATQ9BSE5 352 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 TIMM29Q9BSF4 260 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 NAA50Q9GZZ1 169 aaKnown RBP2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 RGCCQ9H4X1 137 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 TUBG2Q9NRH3 451 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 RHBDL2Q9NX52 303 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 HES2Q9Y543 173 aa2.32□□□□□ -2.04
HMGB1P28-201ENST00000507778 AHDC1Q5TGY3 1603 aaPredicted RBP2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 LRP4O75096 1905 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 PIKFYVEQ9Y2I7 2098 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 IGLV3-12A0A075B6K2 115 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 A0A1W2PQ67 120 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 OR5H1A6NKK0 313 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 ZNF99A8MXY4 864 aaPredicted RBP2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 MSR1P21757 451 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 LOXP28300 417 aaPredicted RBP2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 BMI1P35226 326 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 GGT2P36268 569 aa2.31□□□□□ -2.04
HMGB1P28-201ENST00000507778 PEX19P40855 299 aa2.31□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms