RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 BARX1Q9HBU1 254 aaPredicted RBP7□□□□□ -1.29
SCN1A-207ENST00000507401 SLC17A5Q9NRA2 495 aa7□□□□□ -1.29
SCN1A-207ENST00000507401 TXNL4BQ9NX01 149 aaKnown RBP7□□□□□ -1.29
SCN1A-207ENST00000507401 RPS6KB2Q9UBS0 482 aa7□□□□□ -1.29
SCN1A-207ENST00000507401 B3GALT5Q9Y2C3 310 aa7□□□□□ -1.29
SCN1A-207ENST00000507401 CACNG2Q9Y698 323 aa7□□□□□ -1.29
SCN1A-207ENST00000507401 HEATR1Q9H583 2144 aaKnown RBP7□□□□□ -1.29
SCN1A-207ENST00000507401 ZANQ9Y493 2812 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 TRAV36DV7A0A075B6V5 113 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 A0A087WUJ7 227 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 A0A1B0GWA3 101 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 TMEM82A0PJX8 343 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 TRAPPC13A5PLN9 417 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 HMSDA8MTL9 139 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 RPL36A-HNRNPH2H7BZ11 118 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 FMO6PO60774 539 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 ENTPD6O75354 484 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 KRT33AO76009 404 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 ZNF432O94892 652 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 LY6G6DO95868 133 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 IGLV1-40P01703 118 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 GIPP09681 153 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-207ENST00000507401 ZNF43P17038 809 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 RHCEP18577 417 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 AZGP1P25311 298 aaKnown RBP6.99□□□□□ -1.29
SCN1A-207ENST00000507401 ZNF81P51508 661 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 ZNF83P51522 516 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 CRISP1P54107 249 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 FOXG1P55316 489 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-207ENST00000507401 WNT4P56705 351 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 PCBP3P57721 371 aaKnown RBP6.99□□□□□ -1.29
SCN1A-207ENST00000507401 AP3S2P59780 193 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 RAP2BP61225 183 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 SNRPD2P62316 118 aaKnown RBP6.99□□□□□ -1.29
SCN1A-207ENST00000507401 VLDLRP98155 873 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 HOXC5Q00444 222 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 ZNF91Q05481 1191 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 DBPQ10586 325 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-207ENST00000507401 RAB40BQ12829 278 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 SCARB2Q14108 478 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 CLEC12BQ2HXU8 276 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 C3orf36Q3SXR2 165 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 ZMAT1Q5H9K5 638 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 ALG10BQ5I7T1 473 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 PABPC1L2AQ5JQF8 200 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 FAM69AQ5T7M9 428 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 LCE3BQ5TA77 95 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 METTL11BQ5VVY1 283 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 PYHIN1Q6K0P9 492 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 CNIH2Q6PI25 160 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 SLC22A25Q6T423 547 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 CD300LDQ6UXZ3 194 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 DNM1P46Q6ZS02 220 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 RASSF6Q6ZTQ3 369 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 H1FNTQ75WM6 255 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-207ENST00000507401 TMEM17Q86X19 198 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 C10orf111Q8N326 155 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 FAM169BQ8N8A8 192 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 ADPRHL1Q8NDY3 354 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 OR52H1Q8NGJ2 320 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 OR52N5Q8NH56 324 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 NEUROG1Q92886 237 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 RFT1Q96AA3 541 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 UPRTQ96BW1 309 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 SLC25A36Q96CQ1 311 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 KTI12Q96EK9 354 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-207ENST00000507401 SMR3AQ99954 134 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 PTDSS2Q9BVG9 487 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 TEX12Q9BXU0 123 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 IKZF5Q9H5V7 419 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 C7orf69Q9H7B7 122 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 FKRPQ9H9S5 495 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 FGF20Q9NP95 211 aaPredicted RBP6.99□□□□□ -1.29
SCN1A-207ENST00000507401 NLKQ9UBE8 527 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 TESQ9UGI8 421 aaKnown RBP6.99□□□□□ -1.29
SCN1A-207ENST00000507401 PURGQ9UJV8 347 aaKnown RBP6.99□□□□□ -1.29
SCN1A-207ENST00000507401 SLC13A4Q9UKG4 626 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 RCE1Q9Y256 329 aa6.99□□□□□ -1.29
SCN1A-207ENST00000507401 NAV3Q8IVL0 2385 aa6.98□□□□□ -1.29
SCN1A-207ENST00000507401 PLCE1Q9P212 2302 aa6.98□□□□□ -1.29
SCN1A-207ENST00000507401 A0A0A6YYJ9 748 aa6.98□□□□□ -1.29
SCN1A-207ENST00000507401 A0A0B4J2E0 115 aa6.98□□□□□ -1.29
SCN1A-207ENST00000507401 A0A1B0GX12 115 aa6.98□□□□□ -1.29
SCN1A-207ENST00000507401 E7EQL1 145 aa6.98□□□□□ -1.29
SCN1A-207ENST00000507401 ZNF587BE7ETH6 402 aa6.98□□□□□ -1.29
SCN1A-207ENST00000507401 WRBO00258 174 aa6.98□□□□□ -1.29
SCN1A-207ENST00000507401 S100A9P06702 114 aaKnown RBP6.98□□□□□ -1.29
SCN1A-207ENST00000507401 OSMP13725 252 aa6.98□□□□□ -1.29
SCN1A-207ENST00000507401 ZNF250P15622 560 aa6.98□□□□□ -1.29
SCN1A-207ENST00000507401 HTR2AP28223 471 aa6.98□□□□□ -1.29
SCN1A-207ENST00000507401 APOBEC3AP31941 199 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-207ENST00000507401 LIMS1P48059 325 aa6.98□□□□□ -1.29
SCN1A-207ENST00000507401 MTNR1BP49286 362 aa6.98□□□□□ -1.29
SCN1A-207ENST00000507401 SELENOPP49908 381 aa6.98□□□□□ -1.29
SCN1A-207ENST00000507401 NUDT6P53370 316 aa6.98□□□□□ -1.29
SCN1A-207ENST00000507401 CDH11P55287 796 aa6.98□□□□□ -1.29
SCN1A-207ENST00000507401 RGS8P57771 180 aaPredicted RBP6.98□□□□□ -1.29
SCN1A-207ENST00000507401 DSCR9P59020 149 aa6.98□□□□□ -1.29
SCN1A-207ENST00000507401 GMFBP60983 142 aa6.98□□□□□ -1.29
SCN1A-207ENST00000507401 POLR2GP62487 172 aaKnown RBP eCLIP6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms