RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 HIF3AQ9Y2N7 669 aa13.5□□□□□ -0.25
VIM-208ENST00000497849 CAB39Q9Y376 341 aaPredicted RBP13.5□□□□□ -0.25
VIM-208ENST00000497849 KPTNQ9Y664 436 aa13.5□□□□□ -0.25
VIM-208ENST00000497849 A0A1B0GVI7 797 aa13.49□□□□□ -0.25
VIM-208ENST00000497849 LGALS8O00214 317 aa13.49□□□□□ -0.25
VIM-208ENST00000497849 FFAR1O14842 300 aa13.49□□□□□ -0.25
VIM-208ENST00000497849 SEMG1P04279 462 aa13.49□□□□□ -0.25
VIM-208ENST00000497849 IFNW1P05000 195 aa13.49□□□□□ -0.25
VIM-208ENST00000497849 CD200P41217 278 aa13.49□□□□□ -0.25
VIM-208ENST00000497849 RBM34P42696 430 aaKnown RBP13.49□□□□□ -0.25
VIM-208ENST00000497849 PRSS12P56730 875 aa13.49□□□□□ -0.25
VIM-208ENST00000497849 TAS2R41P59536 307 aa13.49□□□□□ -0.25
VIM-208ENST00000497849 RIPK1Q13546 671 aa13.49□□□□□ -0.25
VIM-208ENST00000497849 NSUN5P1Q3KNT7 163 aa13.49□□□□□ -0.25
VIM-208ENST00000497849 CCDC92Q53HC0 331 aaPredicted RBP13.49□□□□□ -0.25
VIM-208ENST00000497849 METAP1DQ6UB28 335 aaPredicted RBP13.49□□□□□ -0.25
VIM-208ENST00000497849 ADGRG5Q8IZF4 528 aa13.49□□□□□ -0.25
VIM-208ENST00000497849 LRRC75AQ8NAA5 344 aa13.49□□□□□ -0.25
VIM-208ENST00000497849 OR4S1Q8NGB4 309 aa13.49□□□□□ -0.25
VIM-208ENST00000497849 OR5L1Q8NGL2 311 aa13.49□□□□□ -0.25
VIM-208ENST00000497849 OR1F12Q8NHA8 337 aa13.49□□□□□ -0.25
VIM-208ENST00000497849 CNTD2Q9H8S5 307 aa13.49□□□□□ -0.25
VIM-208ENST00000497849 WDR76Q9H967 626 aa13.49□□□□□ -0.25
VIM-208ENST00000497849 NDUFAF4Q9P032 175 aa13.49□□□□□ -0.25
VIM-208ENST00000497849 A4GNTQ9UNA3 340 aa13.49□□□□□ -0.25
VIM-208ENST00000497849 ENPP4Q9Y6X5 453 aa13.49□□□□□ -0.25
VIM-208ENST00000497849 AQP12BA6NM10 295 aa13.48□□□□□ -0.25
VIM-208ENST00000497849 H7C1C5 153 aa13.48□□□□□ -0.25
VIM-208ENST00000497849 DVL1O14640 695 aa13.48□□□□□ -0.25
VIM-208ENST00000497849 RGS6P49758 472 aa13.48□□□□□ -0.25
VIM-208ENST00000497849 DLX1P56177 255 aa13.48□□□□□ -0.25
VIM-208ENST00000497849 LCN6P62502 163 aa13.48□□□□□ -0.25
VIM-208ENST00000497849 KCNJ8Q15842 424 aa13.48□□□□□ -0.25
VIM-208ENST00000497849 AQP12AQ8IXF9 295 aa13.48□□□□□ -0.25
VIM-208ENST00000497849 FGFRL1Q8N441 504 aa13.48□□□□□ -0.25
VIM-208ENST00000497849 BOLLQ8N9W6 283 aaKnown RBP13.48□□□□□ -0.25
VIM-208ENST00000497849 SPERTQ8NA61 448 aa13.48□□□□□ -0.25
VIM-208ENST00000497849 CANT1Q8WVQ1 401 aa13.48□□□□□ -0.25
VIM-208ENST00000497849 TMEM239Q8WW34 195 aa13.48□□□□□ -0.25
VIM-208ENST00000497849 RSRC1Q96IZ7 334 aaKnown RBP13.48□□□□□ -0.25
VIM-208ENST00000497849 SIRT7Q9NRC8 400 aa13.48□□□□□ -0.25
VIM-208ENST00000497849 RNF7Q9UBF6 113 aa13.48□□□□□ -0.25
VIM-208ENST00000497849 RPUSD1Q9UJJ7 312 aaKnown RBP13.48□□□□□ -0.25
VIM-208ENST00000497849 AURKCQ9UQB9 309 aa13.48□□□□□ -0.25
VIM-208ENST00000497849 SACSQ9NZJ4 4579 aa13.48□□□□□ -0.25
VIM-208ENST00000497849 A0A1W2PRD5 423 aa13.47□□□□□ -0.25
VIM-208ENST00000497849 A0A1W2PRF3 423 aa13.47□□□□□ -0.25
VIM-208ENST00000497849 A0A1W2PRM7 423 aa13.47□□□□□ -0.25
VIM-208ENST00000497849 MEGF11A6BM72 1044 aa13.47□□□□□ -0.25
VIM-208ENST00000497849 NPFFO15130 113 aa13.47□□□□□ -0.25
VIM-208ENST00000497849 FKBP6O75344 327 aa13.47□□□□□ -0.25
VIM-208ENST00000497849 ECDO95905 644 aaPredicted RBP13.47□□□□□ -0.25
VIM-208ENST00000497849 CTXN1P60606 82 aa13.47□□□□□ -0.25
VIM-208ENST00000497849 AQP6Q13520 282 aa13.47□□□□□ -0.25
VIM-208ENST00000497849 C11orf91Q3C1V1 193 aa13.47□□□□□ -0.25
VIM-208ENST00000497849 ZDHHC21Q8IVQ6 265 aa13.47□□□□□ -0.25
VIM-208ENST00000497849 APOBEC3DQ96AK3 386 aaPredicted RBP13.47□□□□□ -0.25
VIM-208ENST00000497849 SLCO4A1Q96BD0 722 aa13.47□□□□□ -0.25
VIM-208ENST00000497849 R3HDM4Q96D70 268 aa13.47□□□□□ -0.25
VIM-208ENST00000497849 TCRBV3S1A0A5B6 114 aa13.46□□□□□ -0.25
VIM-208ENST00000497849 OOEPA6NGQ2 149 aa13.46□□□□□ -0.25
VIM-208ENST00000497849 ADARB2-AS1A8MUL3 147 aa13.46□□□□□ -0.25
VIM-208ENST00000497849 NDUFA2O43678 99 aa13.46□□□□□ -0.25
VIM-208ENST00000497849 OR5F1O95221 314 aa13.46□□□□□ -0.25
VIM-208ENST00000497849 ATP6V1G2O95670 118 aa13.46□□□□□ -0.25
VIM-208ENST00000497849 GYPAP02724 150 aa13.46□□□□□ -0.25
VIM-208ENST00000497849 FABP3P05413 133 aa13.46□□□□□ -0.25
VIM-208ENST00000497849 VSIG10L2P0DP72 767 aa13.46□□□□□ -0.25
VIM-208ENST00000497849 IGLL1P15814 213 aa13.46□□□□□ -0.25
VIM-208ENST00000497849 EMX1Q04741 257 aaPredicted RBP13.46□□□□□ -0.25
VIM-208ENST00000497849 OR8B8Q15620 311 aa13.46□□□□□ -0.25
VIM-208ENST00000497849 PNKDQ8N490 385 aa13.46□□□□□ -0.25
VIM-208ENST00000497849 LY6G5BQ8NDX9 201 aa13.46□□□□□ -0.25
VIM-208ENST00000497849 OR2T6Q8NHC8 308 aa13.46□□□□□ -0.25
VIM-208ENST00000497849 PRRC1Q96M27 445 aa13.46□□□□□ -0.25
VIM-208ENST00000497849 FNDC11Q9BVV2 318 aa13.46□□□□□ -0.25
VIM-208ENST00000497849 FAM32AQ9Y421 112 aaKnown RBP13.46□□□□□ -0.25
VIM-208ENST00000497849 TRAV38-1A0A0B4J264 116 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 DHRS12A0PJE2 317 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 A6NIZ1 184 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 H3BUX3 64 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 RER1O15258 196 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 KRT36O76013 467 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 PPP1R3DO95685 299 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 CD28P10747 220 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 RAP1BP61224 184 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 RAP1AP62834 184 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 PPP1R8Q12972 351 aaKnown RBP13.45□□□□□ -0.26
VIM-208ENST00000497849 KLRD1Q13241 179 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 FHL1Q13642 323 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 FAM98BQ52LJ0 330 aaKnown RBP13.45□□□□□ -0.26
VIM-208ENST00000497849 DEFB121Q5J5C9 76 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 ZFP1Q6P2D0 407 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 CRIP3Q6Q6R5 217 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 TBPL2Q6SJ96 375 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 FAM90A1Q86YD7 464 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 Q8N7P7 452 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 OR4C13Q8NGP0 309 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 OR52J3Q8NH60 311 aa13.45□□□□□ -0.26
VIM-208ENST00000497849 ST8SIA4Q92187 359 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms