RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 DNAJB12Q9NXW2 375 aaKnown RBP14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 MRPS28Q9Y2Q9 187 aaKnown RBP14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 RIF1Q5UIP0 2472 aaKnown RBP14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 HLA-DQB1P01920 261 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 ABCD3P28288 659 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 HRH1P35367 487 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 SLC22A24Q8N4F4 322 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 CNEP1R1Q8N9A8 125 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 FAM181AQ8N9Y4 354 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 CCDC71LQ8N9Z2 235 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 CADM4Q8NFZ8 388 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 CHST11Q9NPF2 352 aa14.68□□□□□ -0.06
CCDC88B-209ENST00000494080 MFSD2BA6NFX1 497 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 ADAM10O14672 748 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 GSTZ1O43708 216 aaPredicted RBP14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 CYTIPO60759 359 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 ALOX5APP20292 161 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 FCARP24071 287 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 CX3CR1P49238 355 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 NINJ1Q92982 152 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 CDH20Q9HBT6 801 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 GAR1Q9NY12 217 aaKnown RBP14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 CLEC1BQ9P126 229 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 JTBO76095 146 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 FCGR2AP12318 317 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 EPHA1P21709 976 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 BLVRBP30043 206 aaPredicted RBP14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 ZNF93P35789 620 aaPredicted RBP14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 RFC3P40938 356 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 FASLGP48023 281 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 MTCP1P56278 107 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 PWWP2BQ6NUJ5 590 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 PRR18Q8N4B5 295 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 PLPP5Q8NEB5 264 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 OR56B1Q8NGI3 324 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 CALHM2Q9HA72 323 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 FSCN3Q9NQT6 498 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 FCGR2CP31995 323 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 CYB561P49447 251 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 MPPED2Q15777 294 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 TMEM52Q8NDY8 209 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 OR1N1Q8NGS0 311 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 AKR7LQ8NHP1 331 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 SPACA5Q96QH8 159 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 NMNAT2Q9BZQ4 307 aa14.67□□□□□ -0.06
CCDC88B-209ENST00000494080 ENPP1P22413 925 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 GPR3P46089 330 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 SELENOVP59797 346 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 STPG2Q8N412 459 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 KCNG3Q8TAE7 436 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 WDR90Q96KV7 1748 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 PRSS37A4D1T9 235 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 OR6C76A6NM76 312 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 F12P00748 615 aaPredicted RBP14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 EXT1Q16394 746 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 DMRTC1Q5HYR2 192 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 RSRP1Q9BUV0 290 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 BANF2Q9H503 90 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 SDCBPO00560 298 aaPredicted RBP14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 EIF1BO60739 113 aaKnown RBP14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 LY86O95711 162 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 CD37P11049 281 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 NXPH1P58417 271 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 PSG6Q00889 435 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 MFGE8Q08431 387 aaPredicted RBP14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 ZNF74Q16587 644 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 PRSS53Q2L4Q9 553 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 PLCXD3Q63HM9 321 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 RGS7BPQ6MZT1 257 aaPredicted RBP14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 FAM24BQ8N5W8 94 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 ZNF681Q96N22 645 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 MRPS18AQ9NVS2 196 aaKnown RBP14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 SF3B6Q9Y3B4 125 aaKnown RBP14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 PCDHGA1Q9Y5H4 931 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 MTCH2Q9Y6C9 303 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 A0A1B0GTH9 108 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 LOC102725191A0A1B0GVB3 256 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 LOC107986453A0A1B0GWG9 222 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 BCKDHBP21953 392 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 IL34Q6ZMJ4 242 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 MOB3CQ70IA8 216 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 Q7L0L9 218 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 KMT5CQ86Y97 462 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 ABCA7Q8IZY2 2146 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 LILRB2Q8N423 598 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 PHYHIPLQ96FC7 376 aa14.66□□□□□ -0.06
CCDC88B-209ENST00000494080 CTDSPLO15194 276 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 OR7C1O76099 320 aaPredicted RBP14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 SCGB1D1O95968 90 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 RPS2P15880 293 aaKnown RBP14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 RPL12P30050 165 aaKnown RBP14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 APLNRP35414 380 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 ZNF85Q03923 595 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 MALSU1Q96EH3 234 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 MMP25Q9NPA2 562 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 MMP26Q9NRE1 261 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 UQCC1Q9NVA1 299 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 WNT16Q9UBV4 365 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 QDPRP09417 244 aa14.65□□□□□ -0.06
CCDC88B-209ENST00000494080 MNX1P50219 401 aaPredicted RBP14.65□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms