RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 MRPL41Q8IXM3 137 aaKnown RBP9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 LILRB2Q8N423 598 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 OR4C16Q8NGL9 310 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 OR13C9Q8NGT0 318 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 NUBPLQ8TB37 319 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 TM4SF19Q96DZ7 209 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PRRT1Q99946 306 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 KLHDC3Q9BQ90 382 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SLC25A21Q9BQT8 299 aaPredicted RBP9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CMC2Q9NRP2 79 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PADI1Q9ULC6 663 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 LSM5Q9Y4Y9 91 aaKnown RBP9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PCNX2A6NKB5 2137 aa9.66□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 A0A0B4J2E0 115 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 A0A1B0GX12 115 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 hCG_1809904A0A1W2PP81 198 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 A0A1W2PR64 198 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 A0A1W2PRV1 198 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 A6NLC8 198 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 FAM166BA8MTA8 275 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 TNFSF14O43557 240 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PMP2P02689 132 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 THY1P04216 161 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ACAA1P09110 424 aaPredicted RBP9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CALCBP10092 127 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RPA2P15927 270 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CD53P19397 219 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 NPBWR1P48145 328 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 C15orf54Q8N8G6 183 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 OR4D9Q8NGE8 314 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 OR51D1Q8NGF3 324 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RRNAD1Q96FB5 475 aaKnown RBP9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 NELFAQ9H3P2 528 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RASL12Q9NYN1 266 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 EMC9Q9Y3B6 208 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CSAG2Q9Y5P2 127 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 A0A0A6YYH2 397 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 A6NJ64 397 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 TLX3O43711 291 aaPredicted RBP9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CER1O95813 267 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ITGA5P08648 1049 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ADRA2AP08913 450 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 OR4E1P0C645 316 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF20P17024 532 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF28P17035 718 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CDAP32320 146 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SPEM2Q0P670 501 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SKP2Q13309 424 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 LPCAT3Q6P1A2 487 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 HAVCR2Q8TDQ0 301 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RBM14Q96PK6 669 aaKnown RBP9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 LMF2Q9BU23 707 aaKnown RBP9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 STRADBQ9C0K7 418 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 LUZP4Q9P127 313 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 KCND3Q9UK17 655 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF281Q9Y2X9 895 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 MMP24Q9Y5R2 645 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 UMAD1C9J7I0 102 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF878C9JN71 531 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 NGFRP08138 427 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 HOXB5P09067 269 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 DPP4P27487 766 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 GDF1P27539 372 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 GPR3P46089 330 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 P2RX1P51575 399 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PPIAP62937 165 aaKnown RBP9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 CDK5Q00535 292 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 FOXF1Q12946 379 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SLC9A3R2Q15599 337 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 ZNF770Q6IQ21 691 aaPredicted RBP9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 C11orf87Q6NUJ2 197 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 UEVLDQ8IX04 471 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 RNF113BQ8IZP6 322 aaKnown RBP9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 SLC30A7Q8NEW0 376 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 DHDHQ9UQ10 334 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 C14orf166Q9Y224 244 aaKnown RBP9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 B3GALT1Q9Y5Z6 326 aa9.65□□□□□ -0.86
MSH5-SAPCD1-207ENST00000493662 PHF3Q92576 2039 aaKnown RBP9.65□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 HPP00738 406 aa9.65□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 DAOP14920 347 aa9.65□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 TAGLN2P37802 199 aaKnown RBP9.65□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CDKN2AP42771 156 aaKnown RBP9.65□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 RBP2P50120 134 aa9.65□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ZNF440Q8IYI8 595 aa9.65□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 PMM1Q92871 262 aa9.65□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CGGBP1Q9UFW8 167 aaPredicted RBP9.65□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 GBF1Q92538 1859 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 COL4A3Q01955 1670 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 RALGAPA1Q6GYQ0 2036 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 TMEM269A0A1B0GVZ9 245 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 A0A1W2PQM1 296 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SCGB1D1O95968 90 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CD3DP04234 171 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 ERCC1P07992 297 aaPredicted RBP9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 HOXC4P09017 264 aaPredicted RBP9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 FABP4P15090 132 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 MPLP40238 635 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 RIDAP52758 137 aaKnown RBP9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 CLDN17P56750 224 aa9.64□□□□□ -0.87
MSH5-SAPCD1-207ENST00000493662 SLC37A1P57057 533 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms