RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 CT45A1Q5HYN5 189 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 Q6ZS52 159 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 FAM43BQ6ZT52 329 aaPredicted RBP1.65□□□□□ -2.15
PTPN4-212ENST00000488896 MDP1Q86V88 176 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 CBLN2Q8IUK8 224 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 SNX31Q8N9S9 440 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 CT45A3Q8NHU0 189 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 N4BP2L2Q92802 583 aaPredicted RBP1.65□□□□□ -2.15
PTPN4-212ENST00000488896 SLC38A4Q969I6 547 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 RETNQ9HD89 108 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 ASF1BQ9NVP2 202 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 CCDC59Q9P031 241 aaKnown RBP1.65□□□□□ -2.15
PTPN4-212ENST00000488896 PDP1Q9P0J1 537 aaPredicted RBP1.65□□□□□ -2.15
PTPN4-212ENST00000488896 SLC17A7Q9P2U7 560 aa1.65□□□□□ -2.15
PTPN4-212ENST00000488896 FARSAQ9Y285 508 aaKnown RBP1.65□□□□□ -2.15
PTPN4-212ENST00000488896 YARS2Q9Y2Z4 477 aaKnown RBP1.65□□□□□ -2.15
PTPN4-212ENST00000488896 C9JVG2 144 aa1.64□□□□□ -2.15
PTPN4-212ENST00000488896 LSM1O15116 133 aaKnown RBP1.64□□□□□ -2.15
PTPN4-212ENST00000488896 OR7C2O60412 319 aa1.64□□□□□ -2.15
PTPN4-212ENST00000488896 GATBO75879 557 aaKnown RBP1.64□□□□□ -2.15
PTPN4-212ENST00000488896 FLOT1O75955 427 aa1.64□□□□□ -2.15
PTPN4-212ENST00000488896 SNX4O95219 450 aa1.64□□□□□ -2.15
PTPN4-212ENST00000488896 FTH1P02794 183 aa1.64□□□□□ -2.15
PTPN4-212ENST00000488896 OR1E1P30953 314 aa1.64□□□□□ -2.15
PTPN4-212ENST00000488896 ELF3P78545 371 aaPredicted RBP1.64□□□□□ -2.15
PTPN4-212ENST00000488896 HSP90AB3PQ58FF7 597 aa1.64□□□□□ -2.15
PTPN4-212ENST00000488896 ARMC12Q5T9G4 340 aa1.64□□□□□ -2.15
PTPN4-212ENST00000488896 LRRC66Q68CR7 880 aa1.64□□□□□ -2.15
PTPN4-212ENST00000488896 NPSR1Q6W5P4 371 aa1.64□□□□□ -2.15
PTPN4-212ENST00000488896 CMC1Q7Z7K0 106 aa1.64□□□□□ -2.15
PTPN4-212ENST00000488896 Q8NDZ9 215 aa1.64□□□□□ -2.15
PTPN4-212ENST00000488896 CMTM2Q8TAZ6 248 aa1.64□□□□□ -2.15
PTPN4-212ENST00000488896 TAS2R5Q9NYW4 299 aa1.64□□□□□ -2.15
PTPN4-212ENST00000488896 IL37Q9NZH6 218 aa1.64□□□□□ -2.15
PTPN4-212ENST00000488896 MTCH1Q9NZJ7 389 aa1.64□□□□□ -2.15
PTPN4-212ENST00000488896 SLC17A4Q9Y2C5 497 aa1.64□□□□□ -2.15
PTPN4-212ENST00000488896 TRBV11-1A0A0K0K1C0 115 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 SDHAF1A6NFY7 115 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 NDUFAB1O14561 156 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 MT-ND4P03905 459 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 HSPD1P10809 573 aaKnown RBP1.63□□□□□ -2.15
PTPN4-212ENST00000488896 CSNK2A2P19784 350 aaPredicted RBP1.63□□□□□ -2.15
PTPN4-212ENST00000488896 NDUFA8P51970 172 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 TAS2R43P59537 309 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 SEMG2Q02383 582 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 LIPEQ05469 1076 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 ART3Q13508 389 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 TRAM2Q15035 370 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 PSMD5Q16401 504 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 C1orf185Q5T7R7 199 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 MBOAT2Q6ZWT7 520 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 LINC00469Q8N7U9 141 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 LRRC75AQ8NAA5 344 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 OR5K2Q8NHB8 316 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 LYPD6BQ8NI32 183 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 RNF145Q96MT1 663 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 PANX1Q96RD7 426 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 C20orf24Q9BUV8 137 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 SLIRPQ9GZT3 109 aaKnown RBP1.63□□□□□ -2.15
PTPN4-212ENST00000488896 BEX1Q9HBH7 125 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 TMEM165Q9HC07 324 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 PTTG3PQ9NZH4 202 aa1.63□□□□□ -2.15
PTPN4-212ENST00000488896 FCGBPQ9Y6R7 5405 aaPredicted RBP1.63□□□□□ -2.15
PTPN4-212ENST00000488896 BAZ2AQ9UIF9 1905 aaKnown RBP1.62□□□□□ -2.15
PTPN4-212ENST00000488896 PDZK1P1A8MUH7 402 aa1.62□□□□□ -2.15
PTPN4-212ENST00000488896 CLDN34H7C241 214 aa1.62□□□□□ -2.15
PTPN4-212ENST00000488896 NMT2O60551 498 aa1.62□□□□□ -2.15
PTPN4-212ENST00000488896 WBP4O75554 376 aaKnown RBP1.62□□□□□ -2.15
PTPN4-212ENST00000488896 SCELO95171 688 aa1.62□□□□□ -2.15
PTPN4-212ENST00000488896 BCKDHBP21953 392 aa1.62□□□□□ -2.15
PTPN4-212ENST00000488896 PRKACBP22694 351 aa1.62□□□□□ -2.15
PTPN4-212ENST00000488896 HMGN5P82970 282 aaKnown RBP1.62□□□□□ -2.15
PTPN4-212ENST00000488896 BTN1A1Q13410 526 aa1.62□□□□□ -2.15
PTPN4-212ENST00000488896 ILKQ13418 452 aa1.62□□□□□ -2.15
PTPN4-212ENST00000488896 WDR59Q6PJI9 974 aa1.62□□□□□ -2.15
PTPN4-212ENST00000488896 FAM131AQ6UXB0 335 aa1.62□□□□□ -2.15
PTPN4-212ENST00000488896 NRGNQ92686 78 aa1.62□□□□□ -2.15
PTPN4-212ENST00000488896 C18orf15Q96N68 181 aa1.62□□□□□ -2.15
PTPN4-212ENST00000488896 CCDC77Q9BR77 488 aa1.62□□□□□ -2.15
PTPN4-212ENST00000488896 ACTR3CQ9C0K3 210 aaPredicted RBP1.62□□□□□ -2.15
PTPN4-212ENST00000488896 ZNF160Q9HCG1 818 aa1.62□□□□□ -2.15
PTPN4-212ENST00000488896 AGPAT4Q9NRZ5 378 aa1.62□□□□□ -2.15
PTPN4-212ENST00000488896 MCTS1Q9ULC4 181 aaKnown RBP1.62□□□□□ -2.15
PTPN4-212ENST00000488896 LRRC42Q9Y546 428 aa1.62□□□□□ -2.15
PTPN4-212ENST00000488896 PCDH11XQ9BZA7 1347 aa1.62□□□□□ -2.15
PTPN4-212ENST00000488896 RPRD2Q5VT52 1461 aaKnown RBP1.62□□□□□ -2.15
PTPN4-212ENST00000488896 PLXNB1O43157 2135 aa1.61□□□□□ -2.15
PTPN4-212ENST00000488896 C2orf16Q68DN1 1984 aa1.61□□□□□ -2.15
PTPN4-212ENST00000488896 THADAQ6YHU6 1953 aa1.61□□□□□ -2.15
PTPN4-212ENST00000488896 NINLQ9Y2I6 1382 aa1.61□□□□□ -2.15
PTPN4-212ENST00000488896 IGKV1-27A0A075B6S5 117 aa1.61□□□□□ -2.15
PTPN4-212ENST00000488896 AP3B1O00203 1094 aa1.61□□□□□ -2.15
PTPN4-212ENST00000488896 GABRPO00591 440 aa1.61□□□□□ -2.15
PTPN4-212ENST00000488896 SLC9A3R1O14745 358 aaPredicted RBP1.61□□□□□ -2.15
PTPN4-212ENST00000488896 HUS1O60921 280 aa1.61□□□□□ -2.15
PTPN4-212ENST00000488896 OR2F2O95006 317 aa1.61□□□□□ -2.15
PTPN4-212ENST00000488896 CALRP27797 417 aaKnown RBP1.61□□□□□ -2.15
PTPN4-212ENST00000488896 CCDC183Q5T5S1 534 aa1.61□□□□□ -2.15
PTPN4-212ENST00000488896 TPTE2P1Q5T6R2 138 aa1.61□□□□□ -2.15
PTPN4-212ENST00000488896 OR9G4Q8NGQ1 327 aa1.61□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms