RNA–Protein interactions for RNA: ENST00000486404.5

CHMP3-208, Transcript of charged multivesicular body protein 3, human

TSL 3

Gene CHMP3, Length 650 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP3-208	ENST00000486404	DOCK11	Q5JSL3	2073 aa		10.85	□□□□□ -0.67
CHMP3-208	ENST00000486404	LOC105371242	A0A075B767	164 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	ANKRD30BL	A7E2S9	258 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	GMDS	O60547	372 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	ZNF205	O95201	554 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	CFL1	P23528	166 aa	Known RBP	10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	FAS	P25445	335 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	RBMX	P38159	391 aa	Known RBP	10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	CD200	P41217	278 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	CRISP1	P54107	249 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	ZNF121	P58317	390 aa	Predicted RBP	10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	CDK5	Q00535	292 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	APOF	Q13790	326 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	PRAMEF6	Q5VXH4	476 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	TMEM236	Q5W0B7	351 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	FAHD1	Q6P587	224 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	FAM57B	Q71RH2	274 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	LRRC28	Q86X40	367 aa	Predicted RBP	10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	TIGD4	Q8IY51	512 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	PARP8	Q8N3A8	854 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	BBS1	Q8NFJ9	593 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	OR52H1	Q8NGJ2	320 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	OR8S1	Q8NH09	359 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	OTOS	Q8NHW6	89 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	THEM6	Q8WUY1	208 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	DVL3	Q92997	716 aa	Predicted RBP	10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	ERGIC1	Q969X5	290 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	UTP4	Q969X6	686 aa	Known RBP	10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	REEP6	Q96HR9	211 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	PGAM5	Q96HS1	289 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	REPIN1	Q9BWE0	567 aa	Known RBP	10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	FN3KRP	Q9HA64	309 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	NTN4	Q9HB63	628 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	PATZ1	Q9HBE1	687 aa	Known RBP	10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	UFSP2	Q9NUQ7	469 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	LAMP5	Q9UJQ1	280 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	LRCH1	Q9Y2L9	728 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	AP4S1	Q9Y587	144 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	ARHGAP32	A7KAX9	2087 aa		10.84	□□□□□ -0.67
CHMP3-208	ENST00000486404	PPIAL4E	A0A075B759	164 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404		A0A1B0GWJ7	208 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404	hCG_1807616	A0A1W2PRN6	198 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404		A6NLC8	198 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404	CEACAM18	A8MTB9	384 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404	PPIAL4D	F5H284	164 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404		G3V2T6	193 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404	FAM20B	O75063	409 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404	PPIAL4F	P0DN26	164 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404	EPHA1	P21709	976 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404	GNAL	P38405	381 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404	OPRL1	P41146	370 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404	GATA4	P43694	442 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404	ESRRG	P62508	458 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404	ZNF181	Q2M3W8	571 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404	C1QL2	Q7Z5L3	287 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404	ZDHHC13	Q8IUH4	622 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404	PHC2	Q8IXK0	858 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404	FTMT	Q8N4E7	242 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404	SPATA3	Q8NHX4	192 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404	C7orf69	Q9H7B7	122 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404	C14orf119	Q9NWQ9	140 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404	MIOX	Q9UGB7	285 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404	PPIAL4A	Q9Y536	164 aa		10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404	FBN1	P35555	2871 aa	Known RBP	10.83	□□□□□ -0.68
CHMP3-208	ENST00000486404	C5orf63	A6NC05	138 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404		F5H0A9	414 aa	Predicted RBP	10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	MRPL3	P09001	348 aa	Known RBP	10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	ADRA2C	P18825	462 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	ANOS1	P23352	680 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	DDOST	P39656	456 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	DAP	P51397	102 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	PSMA6	P60900	246 aa	Known RBP	10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	SEC61A1	P61619	476 aa	Known RBP	10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	GNB2	P62879	340 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	SRSF2	Q01130	221 aa	Known RBP	10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	MAB21L1	Q13394	359 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	SNCB	Q16143	134 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	KRTAP24-1	Q3LI83	254 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	ARMCX4	Q5H9R4	360 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	CCDC121	Q6ZUS5	278 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	RHOU	Q7L0Q8	258 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	SLC16A9	Q7RTY1	509 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	KRT77	Q7Z794	578 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	KLB	Q86Z14	1044 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	BOLL	Q8N9W6	283 aa	Known RBP	10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	SPERT	Q8NA61	448 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	OR8B3	Q8NGG8	313 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	NANP	Q8TBE9	248 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404		Q8TCH9	128 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	ZNF418	Q8TF45	676 aa	Predicted RBP	10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	SPSB4	Q96A44	273 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	NEIL1	Q96FI4	390 aa	Predicted RBP	10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	OR8B2	Q96RD0	313 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	AMELY	Q99218	206 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	CNN2	Q99439	309 aa	Known RBP	10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	MRI1	Q9BV20	369 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	PAPOLG	Q9BWT3	736 aa	Known RBP	10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	SSBP3	Q9BWW4	388 aa	Predicted RBP	10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	TMPRSS13	Q9BYE2	586 aa		10.82	□□□□□ -0.68
CHMP3-208	ENST00000486404	GABARAPL1	Q9H0R8	117 aa		10.82	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms