RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 TMEM269A0A1B0GVZ9 245 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 WRBO00258 174 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 LMX1BO60663 402 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 CST4P01036 141 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 IGHV2-70P01814 119 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 QRFPP83859 136 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 TFF2Q03403 129 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 ZP2Q05996 745 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 DEFB110Q30KQ9 67 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 ETV3LQ6ZN32 361 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 Q6ZRG5 221 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 ZNF761Q86XN6 746 aaPredicted RBP11.84□□□□□ -0.51
USP40-214ENST00000483519 BHLHE23Q8NDY6 225 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 SLC25A36Q96CQ1 311 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 SLC26A1Q9H2B4 701 aa11.84□□□□□ -0.51
USP40-214ENST00000483519 C9JQL5 133 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 CHRM2P08172 466 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 ZNF823P16415 610 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 FPR2P25090 351 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 NPY4RP50391 375 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 S100A10P60903 97 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 HGFACQ04756 655 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 POC1AQ8NBT0 407 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 OR51F2Q8NH61 342 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 SLC22A8Q8TCC7 542 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 ZNF524Q96C55 264 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 DNAJA3Q96EY1 480 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 TMEM41AQ96HV5 264 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 ZNF285Q96NJ3 590 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 OCSTAMPQ9BR26 566 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 RGCCQ9H4X1 137 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 FBLN5Q9UBX5 448 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 A0A0C4DFX4 3053 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 P2RY10O00398 339 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 TXNL1O43396 289 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 HCRTR1O43613 425 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 HTR3BO95264 441 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 IGHV2-5P01817 119 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 ST6GAL1P15907 406 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 EIF2S3P41091 472 aaKnown RBP11.83□□□□□ -0.52
USP40-214ENST00000483519 AKR1C3P42330 323 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 STARD6P59095 220 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 RAC1P63000 192 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 AWAT1Q58HT5 328 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 KRBOX4Q5JUW0 171 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 OR52N4Q8NGI2 321 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 SECTM1Q8WVN6 248 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 FAM131CQ96AQ9 280 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 FGGYQ96C11 551 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 ZNF700Q9H0M5 742 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 SLC5A6Q9Y289 635 aa11.83□□□□□ -0.52
USP40-214ENST00000483519 A0A1W2PPE3 182 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 JTBO76095 146 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 GSTP1P09211 210 aaKnown RBP11.82□□□□□ -0.52
USP40-214ENST00000483519 FBP1P09467 338 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 RAB5AP20339 215 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 HAAOP46952 286 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 EMP2P54851 167 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 ERV3-1Q14264 604 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 TMEM268Q5VZI3 342 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.82□□□□□ -0.52
USP40-214ENST00000483519 ARHGEF39Q8N4T4 335 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 FBXO17Q96EF6 278 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 OR10C1Q96KK4 312 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 ANAPC10Q9UM13 185 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 COA3Q9Y2R0 106 aaPredicted RBP11.82□□□□□ -0.52
USP40-214ENST00000483519 LAMA2P24043 3122 aaKnown RBP11.82□□□□□ -0.52
USP40-214ENST00000483519 C7orf77A4D0Y5 90 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 A6NLC8 198 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 H0Y8X5 98 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 HCRTR2O43614 444 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 IGHMP01871 453 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 GAPDHP04406 335 aaKnown RBP11.82□□□□□ -0.52
USP40-214ENST00000483519 SNRNP70P08621 437 aaKnown RBP11.82□□□□□ -0.52
USP40-214ENST00000483519 OR8U9P0C7N5 309 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 PRF1P14222 555 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 ANKRD55Q3KP44 614 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 C1QL3Q5VWW1 255 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 DEGS2Q6QHC5 323 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 DCXRQ7Z4W1 244 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 COMMD1Q8N668 190 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 OR8U1Q8NH10 309 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 MAP3K3Q99759 626 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 BCL2L14Q9BZR8 327 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 GSKIPQ9P0R6 139 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 CLDN16Q9Y5I7 305 aa11.82□□□□□ -0.52
USP40-214ENST00000483519 AP4M1O00189 453 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 GMFGO60234 142 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 PRKNO60260 465 aaPredicted RBP11.81□□□□□ -0.52
USP40-214ENST00000483519 CLN5O75503 358 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 HKR1P10072 659 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 SFTPCP11686 197 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 ACKR3P25106 362 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 CD1CP29017 333 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 CLDN6P56747 220 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 SUPT4H1P63272 117 aaKnown RBP11.81□□□□□ -0.52
USP40-214ENST00000483519 ZNF117Q03924 483 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 DNM1P34Q6PK57 102 aa11.81□□□□□ -0.52
USP40-214ENST00000483519 PEG10Q86TG7 708 aaKnown RBP11.81□□□□□ -0.52
USP40-214ENST00000483519 ZNF101Q8IZC7 436 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms