RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 ZNF35P13682 527 aa13.28□□□□□ -0.28
LDLR-202ENST00000455727 SRD5A2P31213 254 aa13.28□□□□□ -0.28
LDLR-202ENST00000455727 GLIPR1L1Q6UWM5 242 aa13.28□□□□□ -0.28
LDLR-202ENST00000455727 DBX2Q6ZNG2 339 aa13.28□□□□□ -0.28
LDLR-202ENST00000455727 Q6ZSR3 168 aa13.28□□□□□ -0.28
LDLR-202ENST00000455727 PPP1R32Q7Z5V6 425 aa13.28□□□□□ -0.28
LDLR-202ENST00000455727 ZNF101Q8IZC7 436 aa13.28□□□□□ -0.28
LDLR-202ENST00000455727 C12orf45Q8N5I9 185 aaPredicted RBP13.28□□□□□ -0.28
LDLR-202ENST00000455727 CCDC54Q8NEL0 328 aa13.28□□□□□ -0.28
LDLR-202ENST00000455727 OR4S1Q8NGB4 309 aa13.28□□□□□ -0.28
LDLR-202ENST00000455727 ANGPTL6Q8NI99 470 aa13.28□□□□□ -0.28
LDLR-202ENST00000455727 MARVELD3Q96A59 401 aa13.28□□□□□ -0.28
LDLR-202ENST00000455727 FAM71F1Q96KD3 344 aaPredicted RBP13.28□□□□□ -0.28
LDLR-202ENST00000455727 UCN2Q96RP3 112 aa13.28□□□□□ -0.28
LDLR-202ENST00000455727 SOX7Q9BT81 388 aa13.28□□□□□ -0.28
LDLR-202ENST00000455727 LPAR5Q9H1C0 372 aa13.28□□□□□ -0.28
LDLR-202ENST00000455727 FARSAQ9Y285 508 aaKnown RBP13.28□□□□□ -0.28
LDLR-202ENST00000455727 PLEKHA6Q9Y2H5 1048 aa13.28□□□□□ -0.28
LDLR-202ENST00000455727 SIX6O95475 246 aa13.27□□□□□ -0.28
LDLR-202ENST00000455727 WDPCPO95876 746 aa13.27□□□□□ -0.28
LDLR-202ENST00000455727 GSTP1P09211 210 aaKnown RBP13.27□□□□□ -0.28
LDLR-202ENST00000455727 ZNF883P0CG24 379 aa13.27□□□□□ -0.28
LDLR-202ENST00000455727 OTX1P32242 354 aaPredicted RBP13.27□□□□□ -0.28
LDLR-202ENST00000455727 GMFBP60983 142 aa13.27□□□□□ -0.28
LDLR-202ENST00000455727 ZNF468Q5VIY5 522 aaPredicted RBP13.27□□□□□ -0.28
LDLR-202ENST00000455727 H3F3CQ6NXT2 135 aa13.27□□□□□ -0.28
LDLR-202ENST00000455727 ZDHHC22Q8N966 263 aa13.27□□□□□ -0.28
LDLR-202ENST00000455727 ZIC4Q8N9L1 334 aa13.27□□□□□ -0.28
LDLR-202ENST00000455727 KCNE4Q8WWG9 221 aa13.27□□□□□ -0.28
LDLR-202ENST00000455727 SELENOIQ9C0D9 397 aa13.27□□□□□ -0.28
LDLR-202ENST00000455727 G3V3Y1 287 aa13.27□□□□□ -0.29
LDLR-202ENST00000455727 STK17BO94768 372 aa13.27□□□□□ -0.29
LDLR-202ENST00000455727 CFDP00746 253 aaPredicted RBP13.27□□□□□ -0.29
LDLR-202ENST00000455727 APOC1P02654 83 aa13.27□□□□□ -0.29
LDLR-202ENST00000455727 B3GALT5-AS1P59052 145 aa13.27□□□□□ -0.29
LDLR-202ENST00000455727 RAC3P60763 192 aa13.27□□□□□ -0.29
LDLR-202ENST00000455727 UBE2MP61081 183 aaKnown RBP13.27□□□□□ -0.29
LDLR-202ENST00000455727 CXADRP78310 365 aa13.27□□□□□ -0.29
LDLR-202ENST00000455727 ECH1Q13011 328 aa13.27□□□□□ -0.29
LDLR-202ENST00000455727 HYAL4Q2M3T9 481 aa13.27□□□□□ -0.29
LDLR-202ENST00000455727 C20orf196Q8IYI0 205 aa13.27□□□□□ -0.29
LDLR-202ENST00000455727 BEST3Q8N1M1 668 aa13.27□□□□□ -0.29
LDLR-202ENST00000455727 PGAM5Q96HS1 289 aa13.27□□□□□ -0.29
LDLR-202ENST00000455727 SFXN2Q96NB2 322 aa13.27□□□□□ -0.29
LDLR-202ENST00000455727 GHRLQ9UBU3 117 aa13.27□□□□□ -0.29
LDLR-202ENST00000455727 TCFL5Q9UL49 500 aa13.27□□□□□ -0.29
LDLR-202ENST00000455727 SDK2Q58EX2 2172 aa13.26□□□□□ -0.29
LDLR-202ENST00000455727 IGHV3-15A0A0B4J1V0 119 aa13.26□□□□□ -0.29
LDLR-202ENST00000455727 P04436 131 aa13.26□□□□□ -0.29
LDLR-202ENST00000455727 PRF1P14222 555 aa13.26□□□□□ -0.29
LDLR-202ENST00000455727 GNB3P16520 340 aa13.26□□□□□ -0.29
LDLR-202ENST00000455727 ENPP1P22413 925 aa13.26□□□□□ -0.29
LDLR-202ENST00000455727 ANOS1P23352 680 aa13.26□□□□□ -0.29
LDLR-202ENST00000455727 CASRP41180 1078 aa13.26□□□□□ -0.29
LDLR-202ENST00000455727 ALDH3B1P43353 468 aa13.26□□□□□ -0.29
LDLR-202ENST00000455727 SRSF4Q08170 494 aaKnown RBP13.26□□□□□ -0.29
LDLR-202ENST00000455727 SCGB2B2Q4G0G5 96 aa13.26□□□□□ -0.29
LDLR-202ENST00000455727 DCAF12L2Q5VW00 463 aa13.26□□□□□ -0.29
LDLR-202ENST00000455727 TMED4Q7Z7H5 227 aa13.26□□□□□ -0.29
LDLR-202ENST00000455727 SLC25A42Q86VD7 318 aa13.26□□□□□ -0.29
LDLR-202ENST00000455727 ZPBPQ9BS86 351 aa13.26□□□□□ -0.29
LDLR-202ENST00000455727 GSX2Q9BZM3 304 aa13.26□□□□□ -0.29
LDLR-202ENST00000455727 IFT46Q9NQC8 304 aa13.26□□□□□ -0.29
LDLR-202ENST00000455727 FBXO4Q9UKT5 387 aa13.26□□□□□ -0.29
LDLR-202ENST00000455727 ANAPC10Q9UM13 185 aa13.26□□□□□ -0.29
LDLR-202ENST00000455727 KCNK7Q9Y2U2 307 aa13.26□□□□□ -0.29
LDLR-202ENST00000455727 FLVCR1Q9Y5Y0 555 aa13.26□□□□□ -0.29
LDLR-202ENST00000455727 V9GYS6 101 aa13.26□□□□□ -0.29
LDLR-202ENST00000455727 TNFSF11O14788 317 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 SSX5O60225 188 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 CDC14BO60729 498 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 HPP00738 406 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 HCKP08631 526 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 NAT1P18440 290 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 S100A11P31949 105 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 THBS4P35443 961 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 ZNF84P51523 738 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 RAB14P61106 215 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 MRPS34P82930 218 aaKnown RBP13.25□□□□□ -0.29
LDLR-202ENST00000455727 DHRS2Q13268 280 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 SSPNQ14714 243 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 ZNF528Q3MIS6 628 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 FAM27BQ5VT28 67 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 LPCAT3Q6P1A2 487 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 C11orf88Q6PI97 169 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 C3P1Q6ZMU1 363 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 RNF144BQ7Z419 303 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 CD163Q86VB7 1156 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 GVQW1Q8N7I0 195 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 NUDCD2Q8WVJ2 157 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 C10orf35Q96D05 121 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 RBM24Q9BX46 236 aaKnown RBP13.25□□□□□ -0.29
LDLR-202ENST00000455727 WDFY3Q8IZQ1 3526 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 CFAP54Q96N23 3096 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 IGKV1-9A0A0C4DH69 117 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 E9PLN8 166 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 OR3A4PP47883 348 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 OC90Q02509 493 aaPredicted RBP13.25□□□□□ -0.29
LDLR-202ENST00000455727 PNLIPRP3Q17RR3 467 aa13.25□□□□□ -0.29
LDLR-202ENST00000455727 RSPO1Q2MKA7 263 aaPredicted RBP13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms