RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 DPRXA6NFQ7 191 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 LMX1BO60663 402 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 GABARAPO95166 117 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 EPXP11678 715 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 PCSK6P29122 969 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 TGFBR1P36897 503 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 GK2Q14410 553 aaPredicted RBP12.61□□□□□ -0.39
TNF-208ENST00000449264 FAM27D1Q5T7N8 215 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 ADAM5Q6NVV9 412 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 DOK3Q7L591 496 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 MRPL21Q7Z2W9 205 aaKnown RBP12.61□□□□□ -0.39
TNF-208ENST00000449264 CEACAM19Q7Z692 300 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 OR5L1Q8NGL2 311 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 SSC4DQ8WTU2 575 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 AKAP1Q92667 903 aaKnown RBP eCLIP12.61□□□□□ -0.39
TNF-208ENST00000449264 TMEM106AQ96A25 262 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 ISOC1Q96CN7 298 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 PLPPR2Q96GM1 343 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 DACH2Q96NX9 599 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 OR2J1Q9GZK6 312 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 RGCCQ9H4X1 137 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 ESRP2Q9H6T0 727 aaKnown RBP12.61□□□□□ -0.39
TNF-208ENST00000449264 PLEKHA1Q9HB21 404 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 CRIM1Q9NZV1 1036 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 TRBV5-5A0A0J9YX44 114 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.61□□□□□ -0.39
TNF-208ENST00000449264 TRDV1A0A1B0GX56 115 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 WIPF3A6NGB9 483 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 A6NIN4 97 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 ZNF879B4DU55 563 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 J3QW42 95 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 CASKO14936 926 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 ICMTO60725 284 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 DHRS3O75911 302 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 IGLV3-1P01715 115 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 CCL1P22362 96 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 RAD52P43351 418 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 KIR2DL3P43628 341 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 VBP1P61758 197 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 NCS1P62166 190 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 ZMAT1Q5H9K5 638 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 FOXB2Q5VYV0 432 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 CD200R1LQ6Q8B3 271 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 VHLLQ6RSH7 139 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 SLC22A25Q6T423 547 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 UNQ6126/PRO20091Q6UXV3 157 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 PGAP1Q75T13 922 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 SLC25A40Q8TBP6 338 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 RAB2BQ8WUD1 216 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 ORAI1Q96D31 301 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 BCL2L14Q9BZR8 327 aa12.61□□□□□ -0.39
TNF-208ENST00000449264 TXNL4BQ9NX01 149 aaKnown RBP12.61□□□□□ -0.39
TNF-208ENST00000449264 TENM4Q6N022 2769 aa12.6□□□□□ -0.39
TNF-208ENST00000449264 HELZ2Q9BYK8 2649 aaKnown RBP12.6□□□□□ -0.39
TNF-208ENST00000449264 ABCA4P78363 2273 aa12.6□□□□□ -0.39
TNF-208ENST00000449264 hCG_38984A0A1B0GV85 526 aa12.6□□□□□ -0.39
TNF-208ENST00000449264 A6NHS1 94 aa12.6□□□□□ -0.39
TNF-208ENST00000449264 SC5DO75845 299 aa12.6□□□□□ -0.39
TNF-208ENST00000449264 CD2P06729 351 aa12.6□□□□□ -0.39
TNF-208ENST00000449264 MAPK3P27361 379 aaPredicted RBP12.6□□□□□ -0.39
TNF-208ENST00000449264 CALRP27797 417 aaKnown RBP12.6□□□□□ -0.39
TNF-208ENST00000449264 TMBIM6P55061 237 aa12.6□□□□□ -0.39
TNF-208ENST00000449264 CTF1Q16619 201 aa12.6□□□□□ -0.39
TNF-208ENST00000449264 DERL3Q96Q80 235 aa12.6□□□□□ -0.39
TNF-208ENST00000449264 NOX4Q9NPH5 578 aa12.6□□□□□ -0.39
TNF-208ENST00000449264 RSL24D1Q9UHA3 163 aaKnown RBP12.6□□□□□ -0.39
TNF-208ENST00000449264 ZNF391Q9UJN7 358 aa12.6□□□□□ -0.39
TNF-208ENST00000449264 POU2F3Q9UKI9 436 aa12.6□□□□□ -0.39
TNF-208ENST00000449264 FZR1Q9UM11 496 aa12.6□□□□□ -0.39
TNF-208ENST00000449264 SPEF1Q9Y4P9 236 aa12.6□□□□□ -0.39
TNF-208ENST00000449264 UTP20O75691 2785 aaKnown RBP12.59□□□□□ -0.39
TNF-208ENST00000449264 H3BMQ9 156 aa12.59□□□□□ -0.39
TNF-208ENST00000449264 MTRF1O75570 445 aaKnown RBP12.59□□□□□ -0.39
TNF-208ENST00000449264 FAHP16930 419 aa12.59□□□□□ -0.39
TNF-208ENST00000449264 ZNF20P17024 532 aa12.59□□□□□ -0.39
TNF-208ENST00000449264 CFL1P23528 166 aaKnown RBP12.59□□□□□ -0.39
TNF-208ENST00000449264 PEX19P40855 299 aa12.59□□□□□ -0.39
TNF-208ENST00000449264 GSK3AP49840 483 aa12.59□□□□□ -0.39
TNF-208ENST00000449264 FAM3AP98173 230 aa12.59□□□□□ -0.39
TNF-208ENST00000449264 BEX5Q5H9J7 111 aa12.59□□□□□ -0.39
TNF-208ENST00000449264 NCMAPQ5T1S8 102 aa12.59□□□□□ -0.39
TNF-208ENST00000449264 OR14K1Q8NGZ2 314 aa12.59□□□□□ -0.39
TNF-208ENST00000449264 ZNF420Q8TAQ5 688 aaPredicted RBP12.59□□□□□ -0.39
TNF-208ENST00000449264 SPSB4Q96A44 273 aa12.59□□□□□ -0.39
TNF-208ENST00000449264 FGGYQ96C11 551 aa12.59□□□□□ -0.39
TNF-208ENST00000449264 PPIL3Q9H2H8 161 aaKnown RBP12.59□□□□□ -0.39
TNF-208ENST00000449264 NDUFA13Q9P0J0 144 aa12.59□□□□□ -0.39
TNF-208ENST00000449264 PIGLQ9Y2B2 252 aa12.59□□□□□ -0.39
TNF-208ENST00000449264 GSTK1Q9Y2Q3 226 aa12.59□□□□□ -0.39
TNF-208ENST00000449264 ICE1Q9Y2F5 2266 aa12.59□□□□□ -0.39
TNF-208ENST00000449264 ANKRD61A6NGH8 418 aa12.58□□□□□ -0.4
TNF-208ENST00000449264 GGT3PA6NGU5 568 aa12.58□□□□□ -0.4
TNF-208ENST00000449264 PRSS44E7EML9 344 aa12.58□□□□□ -0.4
TNF-208ENST00000449264 SIAH2O43255 324 aa12.58□□□□□ -0.4
TNF-208ENST00000449264 GATBO75879 557 aaKnown RBP12.58□□□□□ -0.4
TNF-208ENST00000449264 CD3EP07766 207 aa12.58□□□□□ -0.4
TNF-208ENST00000449264 ZNF12P17014 697 aa12.58□□□□□ -0.4
TNF-208ENST00000449264 GALP22466 123 aa12.58□□□□□ -0.4
TNF-208ENST00000449264 ACKR3P25106 362 aa12.58□□□□□ -0.4
TNF-208ENST00000449264 GNALP38405 381 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms