RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 FADS2O95864 444 aaKnown RBP3.3□□□□□ -1.88
VPS29-202ENST00000447578 IGHV3-9P01782 118 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 IL3P08700 152 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 HTR1AP08908 422 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 TFPTP0C1Z6 253 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 ADRB3P13945 408 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 AZU1P20160 251 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 MMP11P24347 488 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 PSMB9P28065 219 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 RPL13AP40429 203 aaKnown RBP3.3□□□□□ -1.88
VPS29-202ENST00000447578 OR1E2P47887 323 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 GSSP48637 474 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 C21orf59P57076 290 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 LMO4P61968 165 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 LSM3P62310 102 aaKnown RBP3.3□□□□□ -1.88
VPS29-202ENST00000447578 RPL8P62917 257 aaKnown RBP3.3□□□□□ -1.88
VPS29-202ENST00000447578 SELENOWP63302 87 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 HBA1P69905 142 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 CDK6Q00534 326 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 ACY1Q03154 408 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 EMX1Q04741 257 aaPredicted RBP3.3□□□□□ -1.88
VPS29-202ENST00000447578 FCHO2Q0JRZ9 810 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 SRSF5Q13243 272 aaKnown RBP3.3□□□□□ -1.88
VPS29-202ENST00000447578 AQP6Q13520 282 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 C1orf61Q13536 156 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 SPCS2Q15005 226 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 MAD2L1BPQ15013 274 aaPredicted RBP3.3□□□□□ -1.88
VPS29-202ENST00000447578 MOGQ16653 247 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 NDUFA9Q16795 377 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 TMEM44Q2T9K0 475 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 HNRNPA1L2Q32P51 320 aaKnown RBP3.3□□□□□ -1.88
VPS29-202ENST00000447578 ZNF829Q3KNS6 432 aaPredicted RBP3.3□□□□□ -1.88
VPS29-202ENST00000447578 ZNF658BQ4V348 819 aaPredicted RBP3.3□□□□□ -1.88
VPS29-202ENST00000447578 FAM78AQ5JUQ0 283 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 C9orf64Q5T6V5 341 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 MEDAGQ5VYS4 303 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 KDM4DQ6B0I6 523 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 FAHD2BQ6P2I3 314 aaPredicted RBP3.3□□□□□ -1.88
VPS29-202ENST00000447578 TRIM40Q6P9F5 258 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 C16orf87Q6PH81 154 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 AHSA2Q719I0 299 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 UTS2BQ765I0 119 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 COMMD6Q7Z4G1 85 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 GTSCR1Q86UQ5 136 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 TGIF2LXQ8IUE1 241 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 MMAAQ8IVH4 418 aaKnown RBP3.3□□□□□ -1.88
VPS29-202ENST00000447578 MTURNQ8N3F0 131 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 C15orf54Q8N8G6 183 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 Q8NBF4 154 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 MFSD9Q8NBP5 474 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 OR2T33Q8NG76 320 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 OR10G2Q8NGC3 310 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 OR51G2Q8NGK0 314 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 OR2L2Q8NH16 312 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 OR5AK3PQ8NH89 298 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 NPRL2Q8WTW4 380 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 TRUB1Q8WWH5 349 aaKnown RBP3.3□□□□□ -1.88
VPS29-202ENST00000447578 LZICQ8WZA0 190 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 UBE2E3Q969T4 207 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 RAD51AP1Q96B01 352 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 EFHD2Q96C19 240 aaPredicted RBP3.3□□□□□ -1.88
VPS29-202ENST00000447578 ZNF707Q96C28 371 aaPredicted RBP3.3□□□□□ -1.88
VPS29-202ENST00000447578 C10orf35Q96D05 121 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 CXorf40BQ96DE9 158 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 YIPF6Q96EC8 236 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 WDR34Q96EX3 536 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 FAHD2AQ96GK7 314 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 PPP1R16AQ96I34 528 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 C9orf85Q96MD7 179 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 SLC38A2Q96QD8 506 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 PITX2Q99697 317 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 DOHHQ9BU89 302 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 OCR1Q9BZK8 76 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 SPNS1Q9H2V7 528 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 ZDHHC4Q9NPG8 344 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 MIEF1Q9NQG6 463 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 RHBDL2Q9NX52 303 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 SLC2A8Q9NY64 477 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 AHSPQ9NZD4 102 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 DEC1Q9P2X7 70 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 TAC3Q9UHF0 121 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 ENPP5Q9UJA9 477 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 RNF24Q9Y225 148 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 ANGPT4Q9Y264 503 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 ASF1AQ9Y294 204 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 POLDIP2Q9Y2S7 368 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 PCYT1BQ9Y5K3 369 aaPredicted RBP3.3□□□□□ -1.88
VPS29-202ENST00000447578 HSPE1-MOB4S4R3N1 261 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 PLXNA4Q9HCM2 1894 aa3.3□□□□□ -1.88
VPS29-202ENST00000447578 CHD5Q8TDI0 1954 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 A0A075B6Q4 140 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 C5orf58C9J3I9 102 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 DPM1O60762 260 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 MRPS14O60783 128 aaKnown RBP3.29□□□□□ -1.88
VPS29-202ENST00000447578 GCM2O75603 506 aaPredicted RBP3.29□□□□□ -1.88
VPS29-202ENST00000447578 CLPXO76031 633 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 CCNB2O95067 398 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 GABARAPO95166 117 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 HPP00738 406 aa3.29□□□□□ -1.88
VPS29-202ENST00000447578 IFNA14P01570 189 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms