RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 NUDT3O95989 172 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 ARSAP15289 507 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 HLA-GP17693 338 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 CHRNA7P36544 502 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 RPL27P61353 136 aaKnown RBP6.55□□□□□ -1.36
VPS53-204ENST00000437048 JAG1P78504 1218 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 DLEU7Q6UYE1 221 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 NUFIP2Q7Z417 695 aaKnown RBP6.55□□□□□ -1.36
VPS53-204ENST00000437048 OR5AU1Q8NGC0 362 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 OR5D18Q8NGL1 313 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 ACER3Q9NUN7 267 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 EMC9Q9Y3B6 208 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 R4GMQ9 66 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 DBX1A6NMT0 343 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 FGF2P09038 288 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 ARRB2P32121 409 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 COMPP49747 757 aaPredicted RBP6.55□□□□□ -1.36
VPS53-204ENST00000437048 PNLIPRP2P54317 469 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 MFSD12Q6NUT3 480 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 VSTM2AQ8TAG5 236 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 FAM3CQ92520 227 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 KTI12Q96EK9 354 aaPredicted RBP6.55□□□□□ -1.36
VPS53-204ENST00000437048 RPL10LQ96L21 214 aaKnown RBP6.55□□□□□ -1.36
VPS53-204ENST00000437048 TMEM56Q96MV1 263 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 MS4A8Q9BY19 250 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 GOLGA2P5Q9HBQ8 144 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 ZFP30Q9Y2G7 519 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 PPP1R17O96001 155 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 NTSR1P30989 418 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 UBE2V2Q15819 145 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 GSG1Q2KHT4 349 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 PIP5KL1Q5T9C9 394 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 SLC48A1Q6P1K1 146 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 SLC16A12Q6ZSM3 486 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 C19orf24Q9BVV8 132 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 SLC25A18Q9H1K4 315 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 ZNF768Q9H5H4 540 aaKnown RBP6.55□□□□□ -1.36
VPS53-204ENST00000437048 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.55□□□□□ -1.36
VPS53-204ENST00000437048 PIGLQ9Y2B2 252 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 ZNF320A2RRD8 509 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 SIRPB1O00241 398 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 LEFTY2O00292 366 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 SOD3P08294 240 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 HLA-DRB3P79483 266 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 IKZF1Q13422 519 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 ZNF836Q6ZNA1 936 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 NEIL2Q969S2 332 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 ZNF845Q96IR2 970 aaPredicted RBP6.55□□□□□ -1.36
VPS53-204ENST00000437048 ABHD1Q96SE0 405 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 OR2T8A6NH00 312 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 STC2O76061 302 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 CCR2P41597 374 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 GALR1P47211 349 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 GPM6AP51674 278 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 POU3F1Q03052 451 aaPredicted RBP6.55□□□□□ -1.36
VPS53-204ENST00000437048 SLCO4C1Q6ZQN7 724 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 LINC00346Q8IVM7 164 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 OR2M7Q8NG81 312 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 SAP30LQ9HAJ7 183 aa6.55□□□□□ -1.36
VPS53-204ENST00000437048 SLC6A12P48065 614 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 RTN4IP1Q8WWV3 396 aaPredicted RBP6.54□□□□□ -1.36
VPS53-204ENST00000437048 HHIPL1Q96JK4 782 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 K7ERQ8 282 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 HMGA2P52926 109 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 Q6ZN92 141 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 OR52I2Q8NH67 350 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 COMMD5Q9GZQ3 224 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 MRPL15Q9P015 296 aaKnown RBP6.54□□□□□ -1.36
VPS53-204ENST00000437048 LOC105378220A0A1B0GUY1 285 aaPredicted RBP6.54□□□□□ -1.36
VPS53-204ENST00000437048 TERTO14746 1132 aaKnown RBP6.54□□□□□ -1.36
VPS53-204ENST00000437048 DEGS1O15121 323 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 PRSS23O95084 383 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 GABRA4P48169 554 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 ERVFC1-1P60608 527 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 CPEB2Q7Z5Q1 589 aaKnown RBP6.54□□□□□ -1.36
VPS53-204ENST00000437048 DOLPP1Q86YN1 238 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 CLEC4CQ8WTT0 213 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 TOE1Q96GM8 510 aaKnown RBP6.54□□□□□ -1.36
VPS53-204ENST00000437048 TXNIPQ9H3M7 391 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 PDLIM7Q9NR12 457 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 SIRT5Q9NXA8 310 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 DOCK2Q92608 1830 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 TGIF2-C20orf24A0A0A6YYL0 155 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 SH2D1BO14796 132 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 OR10J4P0C629 311 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 THBS4P35443 961 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 FAM3AP98173 230 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 GDF7Q7Z4P5 450 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 WDR83Q9BRX9 315 aaKnown RBP6.54□□□□□ -1.36
VPS53-204ENST00000437048 S1PR5Q9H228 398 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 MIOXQ9UGB7 285 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 C19orf53Q9UNZ5 99 aaPredicted RBP6.54□□□□□ -1.36
VPS53-204ENST00000437048 PAPPA-AS1Q5QFB9 102 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 RPS19BP1Q86WX3 136 aaKnown RBP6.54□□□□□ -1.36
VPS53-204ENST00000437048 OR52R1Q8NGF1 315 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 OR10D4PQ8NGN7 298 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 ADAT1Q9BUB4 502 aaKnown RBP6.54□□□□□ -1.36
VPS53-204ENST00000437048 CLDND1Q9NY35 253 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 PMS2P1A4D2B8 440 aa6.54□□□□□ -1.36
VPS53-204ENST00000437048 NDUFB7P17568 137 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms